mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | KT2440 | 5,128,812 | 0 | T | G | 61.3% | ‑1.2 / 11.3 | 32 | intergenic (‑47/+18) | CJ019_04823/aer_3 | hypothetical protein/Aerotaxis receptor |
| * | KT2440 | 2,043,578 | 0 | A | C | 54.5% | 6.4 / 18.7 | 23 | intergenic (‑14/+161) | smrA/CJ019_01939 | putative DNA endonuclease SmrA/hypothetical protein |
| * | KT2440 | 690,162 | 0 | G | C | 52.6% | ‑0.9 / 12.4 | 19 | intergenic (+39/‑2420) | bauC/PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| * | KT2440 | 3,026,590 | 0 | A | C | 40.0% | 24.7 / 13.2 | 35 | Q19P (CAG→CCG) | CJ019_02841 | hypothetical protein |
| * | KT2440 | 1,537,415 | 0 | C | G | 38.1% | 20.4 / 11.4 | 21 | A388G (GCG→GGG) | mdfA | Multidrug transporter MdfA |
| * | KT2440 | 1,113,758 | 0 | C | G | 36.4% | 40.7 / 11.3 | 36 | F49L (TTC→TTG) | lptF | Lipopolysaccharide export system permeaseprotein LptF |
| * | KT2440 | 6,063,995 | 0 | A | C | 35.4% | 76.7 / 13.4 | 48 | V162G (GTG→GGG) | cheB_5 | Protein‑glutamatemethylesterase/protein‑glutamine glutaminase |
| * | KT2440 | 5,384,265 | 0 | C | G | 33.3% | 64.7 / 11.6 | 39 | intergenic (+528/‑330) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | KT2440 | 4,427,118 | 0 | G | C | 31.0% | 39.9 / 13.4 | 29 | intergenic (‑29/‑89) | CJ019_04200/CJ019_04201 | hypothetical protein/hypothetical protein |
| * | KT2440 | 2,308,336 | 0 | C | G | 28.9% | 75.4 / 10.7 | 46 | A225P (GCA→CCA) | fucA | L‑fuculose phosphate aldolase |
| * | KT2440 | 3,624,284 | 0 | A | C | 27.4% | 83.9 / 12.5 | 63 | T41P (ACC→CCC) | CJ019_03434 | putative protein |
| * | KT2440 | 3,273,895 | 0 | C | A | 24.5% | 100.6 / 11.9 | 53 | D40E (GAC→GAA) | fabG_5 | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase FabG |
| * | KT2440 | 3,983,006 | 0 | A | C | 24.3% | 144.2 / 10.2 | 70 | T627P (ACC→CCC) | apc3 | Acetophenone carboxylase gamma subunit |
| * | KT2440 | 339,284 | 0 | C | G | 22.6% | 137.5 / 10.1 | 63 | E538Q (GAA→CAA) | CJ019_00314 | hypothetical protein |
| * | KT2440 | 434,376 | 0 | G | . | 21.7% | 58.7 / 13.9 | 23 | coding (207/1173 nt) | bioF | 8‑amino‑7‑oxononanoate synthase |