mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 196,983 | A→G | L5L (TTA→TTG) | skp → | molecular chaperone Skp |
| RA | 392,493 | Δ1 bp | coding (399/1221 nt) | sbmA → | peptide antibiotic transporter SbmA |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 914,535 | Δ1 bp | coding (6/957 nt) | ybjX ← | VirK/YbjX family protein |
| RA | 914,557 | Δ1 bp | intergenic (‑17/‑134) | ybjX ← / → macA | VirK/YbjX family protein/macrolide transporter subunit MacA |
| RA | 915,494 | G→T | K268N (AAG→AAT) | macA → | macrolide transporter subunit MacA |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,884,307 | A→T | D161E (GAT→GAA) | yeaY ← | Slp family lipoprotein YeaY |
| RA | 3,809,168 | (A)8→7 | intergenic (‑40/+26) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 275037–275640 | 286981–286345 | 10706–11945 | 32 [31] | [31] 32 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 26 (0.380) | 40 (0.590) | 32/496 | 2.3 | 54.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 42 (0.620) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 3924531 = | 2 (0.030) | 58 (0.860) | 55/496 | 0.4 | 54.5% | intergenic (‑78/‑145) | ravA/kup | ATPase RavA/low affinity potassium transporter Kup |
| ? | NZ_CP009273 | = 4493332 | 95 (1.410) | intergenic (‑66/‑543) | insG/nanX | IS4‑like element IS4 family transposase/MFS transporter | |||||
| * | ? | NZ_CP009273 | = 3924542 | 6 (0.090) | 75 (1.110) | 71/494 | 0.1 | 63.6% | intergenic (‑89/‑134) | ravA/kup | ATPase RavA/low affinity potassium transporter Kup |
| ? | NZ_CP009273 | 4491907 = | 80 (1.190) | intergenic (+501/+13) | BW25113_RS24825/insG | transposase domain‑containing protein/IS4‑like element IS4 family transposase | |||||