mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 659,964 | T→G | D228A (GAT→GCT) | rlpA ← | endolytic peptidoglycan transglycosylase RlpA |
| RA | 687,389 | C→A | E137* (GAA→TAA) | ybeY ← | rRNA maturation RNase YbeY |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| JC | 4,094,845 | (TCAACA)1→2 | coding (59/1374 nt) | cpxA ← | envelope stress sensor histidine kinase CpxA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 275007–275642 | 286989–286345 | 10704–11983 | 47 [46] | [46] 47 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 46 (0.520) | 54 (0.610) | 48/496 | 2.0 | 54.5% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 44 (0.500) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 2654891 = | 4 (0.050) | 93 (1.050) | 82/494 | 0.1 | 95.9% | intergenic (‑1/+111) | iscS/iscR | cysteine desulfurase/Fe‑S cluster assembly transcriptional regulator IscR |
| ? | NZ_CP009273 | 3576788 = | NA (NA) | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein | |||||
| * | ? | NZ_CP009273 | = 2654899 | 3 (0.030) | 85 (0.960) | 75/496 | 0.3 | 96.6% | intergenic (‑9/+103) | iscS/iscR | cysteine desulfurase/Fe‑S cluster assembly transcriptional regulator IscR |
| ? | NZ_CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑209) | BW25113_RS17830/BW25113_RS25760 | IS1‑like element IS1A family transposase/protein YrhD | |||||