mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 662,369 | T→G | K435N (AAA→AAC) | mrdA ← | peptidoglycan DD‑transpeptidase MrdA |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 924,954 | C→T | G489R (GGG→AGG) | cydD ← | cysteine/glutathione ABC transporter permease/ATP‑binding protein CydD |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,909,461 | G→A | Q111* (CAG→TAG) | proQ ← | RNA chaperone ProQ |
| RA | 1,986,131 | C→A | W56C (TGG→TGT) | pgsA ← | CDP‑diacylglycerol‑‑glycerol‑3‑phosphate 3‑phosphatidyltransferase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1203246 = | 12 (0.150) | 62 (0.800) | 52/464 | 1.0 | 82.5% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 15 (0.190) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 12 (0.150) | 81 (1.050) | 71/464 | 0.2 | 86.1% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 15 (0.190) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 106 (1.280) | 88/496 | 0.0 | 95.5% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3801215 | 5 (0.060) | coding (280/1071 nt) | rfaQ | lipopolysaccharide core heptosyltransferase RfaQ | |||||
| * | ? | NZ_CP009273 | = 2283592 | NA (NA) | 77 (0.930) | 65/496 | 0.5 | 96.2% | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | 3801212 = | 3 (0.040) | coding (283/1071 nt) | rfaQ | lipopolysaccharide core heptosyltransferase RfaQ | |||||
| * | ? | NZ_CP009273 | 2507756 = | NA (NA) | 74 (0.900) | 68/492 | 0.4 | 94.9% | intergenic (+33/‑54) | nupC/BW25113_RS12490 | nucleoside permease NupC/IS4‑like element IS421 family transposase |
| ? | NZ_CP009273 | 2651919 = | 4 (0.050) | coding (376/1851 nt) | hscA | Fe‑S protein assembly chaperone HscA | |||||
| * | ? | NZ_CP009273 | = 2509092 | NA (NA) | 66 (0.810) | 62/490 | 0.6 | 93.0% | intergenic (+170/+30) | BW25113_RS12490/pdeA | IS4‑like element IS421 family transposase/sensor domain‑containing phosphodiesterase |
| ? | NZ_CP009273 | = 2651931 | 5 (0.060) | coding (364/1851 nt) | hscA | Fe‑S protein assembly chaperone HscA | |||||
| * | ? | NZ_CP009273 | 3576788 = | NA (NA) | 88 (1.070) | 81/494 | 0.1 | 98.9% | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein |
| ? | NZ_CP009273 | = 3790487 | 1 (0.010) | coding (180/1260 nt) | waaL | O‑antigen ligase | |||||
| * | ? | NZ_CP009273 | = 3577554 | NA (NA) | 75 (0.910) | 66/494 | 0.5 | 95.0% | intergenic (+14/‑210) | BW25113_RS17830/BW25113_RS25760 | IS1‑like element IS1A family transposase/protein YrhD |
| ? | NZ_CP009273 | 3790479 = | 4 (0.050) | coding (172/1260 nt) | waaL | O‑antigen ligase | |||||