mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 51,394 | C→A | V15F (GTC→TTC) | Cgl0049 ← | Hypothetical protein |
| RA | 274,977 | T→C | I204I (ATT→ATC) | Cgl0255 → | Catalase |
| RA | 364,912 | A→C | E363D (GAA→GAC) | Cgl0344 → | ATPases involved in chromosome partitioning |
| RA | 387,460 | T→C | *66* (TAA→TAG) | Cgl0365 ← | Hypothetical protein |
| RA | 501,579 | G→T | M1V (GTG→GTT) † | Cgl0479 → | PLP‑dependent aminotransferases |
| RA | 517,141 | C→G | I216M (ATC→ATG) | Cgl0489 → | DNA‑directed RNA polymerase beta' subunit/160 kD subunit (split gene in archaea and Syn) |
| RA | 671,707 | Δ1 bp | coding (8/957 nt) | Cgl0657 → | Uncharacterized protein involved in propionate catabolism |
| RA | 736,480 | T→C | V23A (GTG→GCG) | Cgl0716 → | Hypothetical protein |
| RA | 770,809 | G→A | L1112F (CTT→TTT) | Cgl0738 ← | Type II restriction enzyme, methylase subunits |
| RA | 1,229,999 | C→T | T2I (ACA→ATA) | Cgl1171 → | Transcriptional regulators |
| RA | 1,279,070 | T→G | D461E (GAT→GAG) | Cgl1212 → | F0F1‑type ATP synthase beta subunit |
| RA | 1,326,108 | A→G | D444G (GAT→GGT) | Cgl1259 → | Asp‑tRNAAsn/Glu‑tRNAGln amidotransferase B subunit (PET112 homolog) |
| RA | 1,547,309 | A→G | G128G (GGT→GGC) | Cgl1467 ← | Permeases of the major facilitator superfamily |
| RA | 1,751,737 | G→A | V81I (GTC→ATC) | Cgl1651 → | Hypothetical protein |
| RA | 2,022,573 | G→A | R103H (CGC→CAC) | Cgl1920 → | Mn‑dependent transcriptional regulator |
| RA | 2,029,483 | G→A | G103S (GGC→AGC) | Cgl1925 → | Transcriptional regulator |
| RA | 2,036,724 | A→C | intergenic (‑315/‑88) | Cgl1929 ← / → Cgl1930 | Hypothetical protein/SOS‑response transcriptional repressors (RecA‑mediated autopeptidases) |
| RA | 2,041,951 | G→T | G75V (GGT→GTT) | Cgl1934 → | Transcriptional regulators of sugar metabolism |
| RA | 2,058,943 | A→G | S160P (TCT→CCT) | Cgl1949 ← | 2‑methylthioadenine synthetase |
| RA | 2,060,507 | C→T | intergenic (+5/‑113) | Cgl1950 → / → Cgl1951 | ABC‑type transporter, ATPase component (glutamate)/ABC‑type transporter, periplasmic component (glutamate) |
| RA | 2,083,859 | T→A | G444G (GGA→GGT) | Cgl1975 ← | Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
| RA | 2,099,897 | T→C | intergenic (+79/‑343) | Cgl1988 → / → Cgl1990 | Hypothetical protein/ABC‑type transporter, periplasmic component |
| RA | 2,160,737 | C→T | P23L (CCT→CTT) | Cgl2047 → | Hypothetical protein |
| RA | 2,207,081 | T→C | R4R (CGA→CGG) | Cgl2089 ← | Pyruvate kinase |
| RA | 2,296,635 | (C)6→5 | coding (265/390 nt) | Cgl2168 ← | Hypothetical membrane protein |
| RA | 2,425,773 | G→A | F61F (TTC→TTT) | Cgl2292 ← | Coproporphyrinogen III oxidase and related FeS oxidoreductases |
| RA | 2,448,170 | C→T | intergenic (+168/+156) | Cgl2311 → / ← Cgl2312 | Coenzyme F420‑dependent N5,N10‑methylene tetrahydromethanopterin reductase and related flavin‑dependent oxidoreductases/Choline‑glycine betaine transporter and EctP protein |
| RA | 2,981,097 | C→T | L201L (CTG→CTA) | Cgl2796 ← | NAD‑dependent aldehyde dehydrogenases |
| RA | 3,018,413 | T→C | V366A (GTC→GCC) | Cgl2830 → | Hypothetical membrane protein |
| RA | 3,155,328 | T→C | Q457Q (CAA→CAG) | Cgl2951 ← | Predicted transposase |
| RA | 3,156,189 | T→G | V170V (GTA→GTC) | Cgl2951 ← | Predicted transposase |
| RA | 3,260,714 | G→A | intergenic (‑629/‑416) | Cgl3058 ← / → Cgl3059 | Permeases of the major facilitator superfamily/Transcriptional regulator |
| RA | 3,286,754 | G→A | E44E (GAG→GAA) | Cgl3077 → | Hypothetical membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BA000036 | 1776592 | 1987123 | 210532 | 143 [141] | [138] 143 | codon recognized:GTG–Cgl1881 | codon recognized:GTG,Cgl1675,Cgl1676,Cgl1677,Cgl1678,Cgl1679,Cgl1680,Cgl1681,Cgl1682,Cgl1683,Cgl1684,Cgl1685,Cgl1686,Cgl1687,Cgl1688,Cgl1689,Cgl1690,Cgl1691,Cgl1692,Cgl1693,Cgl1694,Cgl1695,Cgl1696,Cgl1697,Cgl1698,Cgl1699,Cgl1700,Cgl1701,Cgl1702,Cgl1703,Cgl1704,Cgl1705,Cgl1706,Cgl1707,Cgl1708,Cgl1709,Cgl1710,Cgl1711,Cgl1712,Cgl1713,Cgl1714,Cgl1715,Cgl1716,Cgl1717,Cgl1718,Cgl1719,Cgl1720,Cgl1721,Cgl1722,Cgl1723,Cgl1724,Cgl1725,Cgl1726,Cgl1727,Cgl1728,Cgl1729,Cgl1730,Cgl1731,Cgl1733,Cgl1732,Cgl1734,Cgl1735,Cgl1736,Cgl1737,Cgl1738,Cgl1739,Cgl1740,Cgl1741,Cgl1742,Cgl1743,Cgl1744,Cgl1745,Cgl1746,Cgl1747,Cgl1748,Cgl1749,Cgl1750,Cgl1751,Cgl1752,Cgl1753,Cgl1754,Cgl1755,Cgl1756,Cgl1757,Cgl1758,Cgl1759,Cgl1760,Cgl1761,Cgl1762,Cgl1763,Cgl1764,Cgl1765,Cgl1766,Cgl1767,Cgl1768,Cgl1769,Cgl1770,Cgl1771,Cgl1772,Cgl1773,Cgl1774,Cgl1775,Cgl1776,Cgl1777,Cgl1778,Cgl1779,Cgl1780,Cgl1781,Cgl1782,Cgl1783,Cgl1784,Cgl1785,Cgl1786,Cgl1787,Cgl1788,Cgl1789,Cgl1790,Cgl1791,Cgl1792,Cgl1793,Cgl1794,Cgl1795,Cgl1796,Cgl1797,Cgl1798,Cgl1799,Cgl1800,Cgl1801,Cgl1802,Cgl1803,Cgl1804,Cgl1805,Cgl1806,Cgl1807,Cgl1808,Cgl1809,Cgl1810,Cgl1811,Cgl1812,Cgl1813,Cgl1814,Cgl1815,Cgl1816,Cgl1817,Cgl1818,Cgl1819,Cgl1820,Cgl1821,Cgl1822,Cgl1823,Cgl1824,Cgl1825,Cgl1826,Cgl1828,Cgl1827,Cgl1829,Cgl1830,Cgl1831,Cgl1832,Cgl1833,Cgl1834,Cgl1835,Cgl1836,Cgl1837,Cgl1838,Cgl1839,Cgl1840,Cgl1841,Cgl1842,Cgl1843,Cgl1844,Cgl1845,Cgl1846,Cgl1847,Cgl1848,Cgl1849,Cgl1850,Cgl1851,Cgl1852,Cgl1853,Cgl1854,Cgl1855,Cgl1856,Cgl1857,Cgl1858,Cgl1859,Cgl1860,Cgl1861,Cgl1862,Cgl1863,Cgl1864,Cgl1865,Cgl1866,Cgl1867,Cgl1868,Cgl1869,Cgl1870,Cgl1871,Cgl1872,Cgl1873,Cgl1874,Cgl1875,Cgl1876,Cgl1877,Cgl1878,Cgl1879,Cgl1880,Cgl1881 |