mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,292,848 | 0 | A | T | 71.1% | 131.9 / 247.8 | 278 | noncoding (11/132 nt) | CXP41_RS06830 | RtT sRNA |
| * | NZ_CP025268 | 1,293,000 | 0 | A | G | 66.7% | 188.5 / 255.6 | 271 | noncoding (37/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 1,292,991 | 0 | C | T | 62.0% | 162.6 / 263.4 | 282 | noncoding (46/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 1,292,810 | 0 | G | A | 60.0% | 42.0 / inf | 386 | noncoding (49/132 nt) | CXP41_RS06830 | RtT sRNA |
| * | NZ_CP025268 | 1,292,982 | 0 | A | G | 54.8% | ‑5.5 / inf | 274 | noncoding (55/132 nt) | CXP41_RS06835 | RtT sRNA |
| Marginal new junction evidence (lowest skew 10 of 276 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | 695911 = | 0 (0.000) | 175 (0.620) +GAAGAAACAATC |
34/252 | 3.7 | 54.8% | intergenic (‑33/+2) | CXP41_RS03680/CXP41_RS03685 | tRNA‑Gln/tRNA‑Gln |
| ? | NZ_CP025268 | = 696182 | 316 (1.020) | intergenic (‑1/+379) | CXP41_RS03695/asnB | tRNA‑Met/asparagine synthase B | |||||
| * | ? | NZ_CP025268 | 373973 = | 403 (1.300) | 146 (0.470) | 35/276 | 4.1 | 27.5% | intergenic (+41/‑537) | dmpG/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter |
| ? | NZ_CP025268 | = 374376 | 366 (1.180) | intergenic (+444/‑134) | dmpG/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter | |||||
| * | ? | NZ_CP025268 | = 3549238 | 491 (1.580) | 64 (0.240) +21 bp |
28/234 | 4.2 | 13.8% | coding (1519/2085 nt) | malQ | 4‑alpha‑glucanotransferase |
| ? | NZ_CP025268 | 3549260 = | 450 (1.450) | coding (1497/2085 nt) | malQ | 4‑alpha‑glucanotransferase | |||||
| * | ? | NZ_CP025268 | = 339139 | 339 (1.090) | 136 (0.450) | 29/266 | 4.8 | 31.2% | coding (296/297 nt) | CXP41_RS01780 | protein YahH |
| ? | NZ_CP025268 | 3152974 = | 273 (0.910) | intergenic (+124/+148) | yghA/exbD | NADP(+)‑dependent aldehyde reductase/TonB system transport protein ExbD | |||||
| * | ? | NZ_CP025268 | 66608 = | 143 (0.460) | 27 (0.200) +78 bp |
10/120 | 4.8 | 31.0% | intergenic (‑57/+58) | araD/araA | L‑ribulose‑5‑phosphate 4‑epimerase/L‑arabinose isomerase |
| ? | NZ_CP025268 | = 66614 | 136 (0.440) | intergenic (‑63/+52) | araD/araA | L‑ribulose‑5‑phosphate 4‑epimerase/L‑arabinose isomerase | |||||
| * | ? | NZ_CP025268 | 4411100 = | 497 (1.600) | 18 (0.070) | 12/246 | 8.5 | 4.1% | intergenic (+79/‑101) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| ? | NZ_CP025268 | 4411161 = | 410 (1.480) | intergenic (+140/‑40) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
| * | ? | NZ_CP025268 | = 4411560 | 352 (1.130) | 19 (0.070) | 12/256 | 8.8 | 5.2% | coding (360/732 nt) | rlmB | 23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| ? | NZ_CP025268 | = 4411623 | 363 (1.260) | coding (423/732 nt) | rlmB | 23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
| * | ? | NZ_CP025268 | 2769444 = | 354 (1.140) | 9 (0.040) | 7/188 | 8.8 | 3.9% | intergenic (‑267/+93) | abpA/yfjM | anti‑bacteriophage protein AbpA/DUF1524 domain‑containing protein |
| ? | NZ_CP025268 | = 2769435 | 199 (0.940) | intergenic (‑258/+102) | abpA/yfjM | anti‑bacteriophage protein AbpA/DUF1524 domain‑containing protein | |||||
| * | ? | NZ_CP025268 | = 3356291 | 408 (1.310) | 13 (0.040) | 12/260 | 8.9 | 3.4% | coding (882/4461 nt) | gltB | glutamate synthase large subunit |
| ? | NZ_CP025268 | = 3356327 | 361 (1.230) | coding (918/4461 nt) | gltB | glutamate synthase large subunit | |||||
| * | ? | NZ_CP025268 | 3620565 = | NA (NA) | 14 (0.050) | 10/258 | 9.6 | 100% | coding (687/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NZ_CP025268 | 3620579 = | 0 (0.000) | coding (701/4236 nt) | rhsB | rhs element protein RhsB | |||||