mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 329,292 | T→A | I15F (ATC→TTC) | betI ← | DNA‑binding transcriptional repressor BetI |
| MC JC | 676,374 | Δ11,477 bp | IS5‑mediated | [ybeQ]–gltI | [ybeQ], ybeR, djlB, ybeT, ybeU, djlC, hscC, rihA, gltL, gltK, gltJ, sroC, gltI |
| RA | 803,662 | C→A | L54I (CTT→ATT) | ybhJ → | putative hydratase YbhJ |
| MC JC | 1,303,379 | Δ11 bp | coding (481‑491/921 nt) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| JC JC | 1,743,496 | IS5 (–) +4 bp | coding (40‑43/1374 nt) | mdtK → | multidrug efflux pump MdtK |
| RA | 1,905,761 | G→A | G25D (GGT→GAT) | mntP → | Mn(2(+)) exporter |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| JC JC | 1,995,413 | IS5 (–) +4 bp | intergenic (‑54/‑239) | uvrY ← / → yecU | DNA‑binding transcriptional activator UvrY/protein YecU |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| JC JC | 2,174,495 | IS1 (+) +9 bp | coding (64‑72/285 nt) | gatB ← | galactitol‑specific PTS enzyme IIB component |
| JC JC | 3,262,850 | IS5 (–) +4 bp | coding (808‑811/1209 nt) | tdcD ← | propionate kinase |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| JC JC | 3,939,153 | IS2 (+) +5 bp | coding (927‑931/993 nt) | rbsR → | DNA‑binding transcriptional dual regulator RbsR |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| MC JC | 4,368,009 | Δ802 bp | [aspA]–[fxsA] | [aspA], [fxsA] | |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1821689 | 1821874 | 186 | 119 [115] | [115] 121 | chbB/osmE | N,N'‑diacetylchitobiose‑specific PTS enzyme IIB component/osmotically‑inducible lipoprotein OsmE |
| * | * | ÷ | NC_000913 | 2839338 | 2839563 | 226 | 119 [117] | [117] 119 | [ascF] | [ascF] |
| * | * | ÷ | NC_000913 | 3423716–3424234 | 3424584–3424238 | 5–869 | 122 [116] | [116] 120 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 218 (0.520) | 199 (0.570) | 110/160 | 0.6 | 46.6% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 275 (0.780) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 218 (0.520) | 149 (0.430) | 81/160 | 2.0 | 39.5% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 275 (0.780) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 544 (1.350) | 166/184 | 0.0 | 99.9% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 1 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||