| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 16,990 | IS150 (+) +3 bp | intergenic (‑32/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 16990 = | 0 (0.000) | 48 (1.050) | 35/150 | 0.3 | 100% | intergenic (‑32/‑498) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | = 16992 | 0 (0.000) | 63 (1.380) | 41/150 | 0.1 | 100% | intergenic (‑34/‑496) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
ACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/16918‑16992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAA < REL606/2775877‑2775803 ACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTT < 1:1193138/76‑1ACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTT < 1:791727/76‑1 ttCGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTAC < 1:1093842/74‑1 TACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTAC > 1:1049324/1‑76 ACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACT < 1:1179292/76‑1 ACGGTCAGTAAGAGCCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACT > 1:460222/1‑76 CAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACC < 1:249404/76‑1 GTAAGAAGCACTCTACAAGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCANTTNTACTGCACCCA > 2:235673/1‑76 TAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCAT > 2:307300/1‑76 GAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTT < 2:879078/76‑1 GAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTT < 1:266349/76‑1 AGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTG < 2:1218937/76‑1 ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGG > 2:991282/1‑76 CTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGA < 1:656604/76‑1 CTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGA > 1:1174329/1‑76 CTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACG < 1:168342/76‑1 CTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACG < 1:575751/76‑1 ACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGAT > 1:286326/1‑76 CATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATG < 2:583116/76‑1 CATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATG < 1:332866/76‑1 TGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAA < 2:867331/76‑1 GTGTTCAGCATATAGGGGGCCTGGGNTAGATAGTAATATATCACTTGNACTTCACCCATTTTGTTGGACGATGAAA < 1:217887/76‑1 GTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAA < 1:1106888/76‑1 GTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATG > 1:774793/1‑76 GTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATG > 2:298521/1‑76 TTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGG < 1:434697/76‑1 TCAGCTTATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGA < 1:305840/76‑1 AGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 1:1008299/76‑1 GCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 2:414814/76‑1 GCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 2:1395265/76‑1 GCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTNGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:1439077/76‑1 ATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGa < 2:167897/76‑2 TATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCC > 2:938751/1‑76 ATAGGGGGCCTCGGGTTGATAGTAAAATATCACTNGTACTGCNCCNATNTTGTCGGATGATGAAATGGAATAGCCC > 1:1279101/1‑76 AGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:386822/76‑1 GGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 2:1320731/76‑1 GGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 1:975988/76‑1 GCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < 2:569753/76‑1 CTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGT < 1:609155/76‑1 TCGGGTTGATAGTAAAATATCACTTGTACTGCACCCCTTTCGTTGGACGATGAAATGGAATAGCCCCTAATATGTC > 2:1173147/1‑76 GTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAGAGCCCCTAATATGTCAAAG < 1:1252807/76‑1 TTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGC < 1:619614/76‑1 AGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAA > 1:1017857/1‑76 AGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAA > 1:1037787/1‑76 AGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAA > 2:392905/1‑76 AGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAA > 2:324672/1‑76 TAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA < 2:1334390/76‑1 AAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACC > 1:491956/1‑76 AAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACC > 1:491966/1‑76 ATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT > 2:991450/1‑76 TCACTTGTACTGCANCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAACTCCNCTTTT < 2:1483462/76‑1 TCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTT < 2:1049322/76‑1 agaTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG < 2:1346729/73‑1 aACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGAACCTAATATGTCAAAGCCAAAATAACCTTTTG > 1:259040/2‑76 CACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG < 1:1127612/76‑1 gaTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA > 1:331430/3‑76 gaTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA < 2:1332733/74‑1 gaTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA > 1:800348/3‑76 ACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA > 2:1002020/1‑76 aTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA < 1:856154/75‑1 CTTGTACTGGACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA < 1:1002022/76‑1 CTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA > 1:1054964/1‑76 TTGTACTGCACCCATATTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAA > 1:142205/1‑76 ACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/16918‑16992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAA < REL606/2775877‑2775803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |