| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 16,990 | IS150 (+) +3 bp | intergenic (‑32/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 16990 = | 0 (0.000) | 48 (1.050) | 35/150 | 0.3 | 100% | intergenic (‑32/‑498) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | = 16992 | 0 (0.000) | 63 (1.380) | 41/150 | 0.1 | 100% | intergenic (‑34/‑496) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATG > REL606/590399‑590545 | tGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAccc > 2:282737/1‑76 (MQ=34) gACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCt < 2:1030066/76‑1 (MQ=34) gACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCt < 2:938768/76‑1 (MQ=34) gACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCt > 2:1260734/1‑76 (MQ=34) gACTCCAANTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCt > 1:1429029/1‑76 (MQ=21) aCTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTg < 1:521738/76‑1 (MQ=34) aCTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTg < 2:1235248/76‑1 (MQ=34) aCTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGCGGTCAGTACACCCTg < 1:140736/76‑1 (MQ=21) ccAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTgggg > 2:144021/1‑76 (MQ=39) ccAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTgggg > 1:1158609/1‑76 (MQ=39) cAATTGAATATCCGATTCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCNGTACACCCTGGGGc > 1:1267398/1‑76 (MQ=255) aTTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg > 1:800681/1‑76 (MQ=40) atCTGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTcc > 2:864762/1‑76 (MQ=255) ggAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCaaa > 2:892385/1‑76 (MQ=255) aTCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAAccc > 1:988318/1‑76 (MQ=255) aTCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAAccc < 2:979661/76‑1 (MQ=255) cAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGa > 1:838204/1‑76 (MQ=255) cAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGa > 1:623957/1‑76 (MQ=255) cAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGa > 1:472619/1‑76 (MQ=255) cAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGa > 1:472624/1‑76 (MQ=255) cAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGa > 1:373003/1‑76 (MQ=255) cTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAAt > 1:60753/1‑76 (MQ=255) tGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGa < 1:1110199/76‑1 (MQ=255) gCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGAt < 2:697306/76‑1 (MQ=255) gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAg < 1:1370327/76‑1 (MQ=255) gtTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTc < 2:1230331/76‑1 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTccc > 1:462942/1‑76 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCct < 2:333818/76‑1 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCct > 1:958514/1‑76 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCctt > 2:1424676/1‑76 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCcttct < 2:509983/76‑1 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCcgtct < 1:1380805/76‑1 (MQ=255) ccAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGc > 2:390117/1‑76 (MQ=255) aaCTTTTTGGGGTCTCTACTCCCTGAGGCTGCCACTCCAAGCCCGAACAATTTGGATCGTAGTCCCTTCTTCGCAt < 2:31108/76‑1 (MQ=37) aCTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATg < 2:1409673/76‑1 (MQ=255) tttttGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCANGGa < 1:1330742/76‑1 (MQ=255) ggggTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCaa > 1:705078/1‑76 (MQ=255) gggTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAat > 2:271190/1‑76 (MQ=255) ggTCAGTACCCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAata < 1:632740/76‑1 (MQ=255) gTCAGTACCCCCTGGGGCTNCNACTCCAANCCCGAACAATTTGAATGGTAGNCCNTTCTTCGCATGGAGGCAatat < 2:222979/76‑1 (MQ=255) gTCAGTACCCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAatat < 1:892387/76‑1 (MQ=255) gTCAGTACCCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAatat < 1:967078/76‑1 (MQ=255) gTCAGTACCCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAatat < 1:282739/76‑1 (MQ=255) gTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTGTTCGCATGGAGGCAatat < 1:1393660/76‑1 (MQ=255) tCAGTACCCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAAtata < 1:659612/76‑1 (MQ=255) cAGTACCCCCTGGGGCTGCCACTCCTAATCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATaa < 1:231169/76‑1 (MQ=255) cAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATaa < 1:330005/76‑1 (MQ=255) aGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATaaa < 1:196513/76‑1 (MQ=255) gTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAAc > 2:1333863/1‑76 (MQ=255) acacCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACAt > 1:1038178/1‑76 (MQ=255) acacCCTGGGGCTGCCACTCCAAACCCAAACAATNTGGATGGNTGNCCNTTCTGCGCGTGGAGGCAATATAAACAt > 1:1288201/1‑76 (MQ=255) cacCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATg < 2:362335/76‑1 (MQ=255) | TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATG > REL606/590399‑590545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |