| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 16,990 | IS150 (+) +3 bp | intergenic (‑32/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 16990 = | 0 (0.000) | 48 (1.050) | 35/150 | 0.3 | 100% | intergenic (‑32/‑498) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | = 16992 | 0 (0.000) | 63 (1.380) | 41/150 | 0.1 | 100% | intergenic (‑34/‑496) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
Only 100 of 104 total aligned reads displayed.
TTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATC > REL606/16915‑17065 | ttGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCa > 2:575749/1‑76 (MQ=255)tctgactccgattgaatgacggaatcagacctatatgcctcgtgtttaactgtccaactttntgnggtcagtacaa < 2:227926‑M1/1‑1 (MQ=255)tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 2:910522‑M1/1‑1 (MQ=255)tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgcccaactttttggggtcagtacaa > 1:320108‑M1/76‑76 (MQ=255) ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAc < 2:789284‑M1/2‑1 (MQ=255) ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAc < 2:679016‑M1/2‑1 (MQ=255) tgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACt > 2:569475‑M1/74‑76 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaagta > 1:786999‑M1/73‑73 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTc > 2:383555‑M1/73‑76 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTc < 2:1285264‑M1/4‑1 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTc < 1:911809‑M1/4‑1 (MQ=255) aCCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTt < 1:791727‑M1/76‑2 (MQ=255) aCCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTt < 1:1193138‑M1/76‑2 (MQ=255) ctccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCgg < 2:1161664‑M1/6‑1 (MQ=255) ttcggTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtac < 1:1093842‑M1/74‑6 (MQ=255) tACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtac > 1:1049324‑M1/1‑71 (MQ=255) aCGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtact < 1:1179292‑M1/76‑7 (MQ=255) aCGGTCAGTAAGAGCCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtact > 1:460222‑M1/1‑70 (MQ=255) ttgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCttt > 2:822469‑M1/65‑76 (MQ=255) tgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCtttt < 1:370228‑M1/13‑1 (MQ=255) tgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCtttt > 2:743875‑M1/64‑76 (MQ=255) gaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTtc < 2:733285‑M1/14‑1 (MQ=255) gaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTtc > 1:853646‑M1/63‑76 (MQ=255) cAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacc < 1:249404‑M1/76‑12 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTtct < 1:285242‑M1/15‑1 (MQ=255) gTAAGAAGCACTCTACAAGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCANTtntactgcaccca > 2:235673‑M1/1‑63 (MQ=255) tAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccat > 2:307300‑M1/1‑62 (MQ=255) atcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTa < 1:496400‑M1/18‑1 (MQ=255) atcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTa < 1:1023687‑M1/18‑1 (MQ=255) atcggaatcagacctatacgcctcgtgnttnacngtccaacnttctggggtcagtacaACTCGGGGCTTTTCTCTa > 1:1278728‑M1/59‑76 (MQ=255) gagGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccatttt < 1:266349‑M1/76‑18 (MQ=255) gagGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccatttt < 2:879078‑M1/76‑18 (MQ=255) agGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttg < 2:1218937‑M1/76‑19 (MQ=255) gaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTg > 2:848263‑M1/55‑76 (MQ=255) aatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGc < 2:1058604‑M1/23‑1 (MQ=255) aatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGc < 1:388824‑M1/23‑1 (MQ=255) atcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGcc < 2:738754‑M1/24‑1 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCg > 2:914938‑M1/52‑76 (MQ=255) aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttgg > 2:991282‑M1/1‑54 (MQ=255) ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttgga < 1:656604‑M1/76‑24 (MQ=255) ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttgga > 1:1174329‑M1/1‑53 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc > 2:1164157‑M1/49‑76 (MQ=255) ctACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacg < 1:575751‑M1/76‑26 (MQ=255) ctACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacg < 1:168342‑M1/76‑26 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAg < 1:348723‑M1/30‑1 (MQ=255) cATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatg < 1:332866‑M1/76‑29 (MQ=255) cATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatg < 2:583116‑M1/76‑29 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCt < 2:702783‑M1/32‑1 (MQ=255) tatatgcctcgtgtttaactgtccaactttttagggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCt > 1:298293‑M1/45‑76 (MQ=255) tgtgTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaa < 2:867331‑M1/76‑31 (MQ=255) gtgtTCAGCATATAGGGGGCCTGGGNTAGATAGTAATATATCACTtgnacttcacccattttgttggacgatgaaa < 1:217887‑M1/76‑32 (MQ=255) gtgtTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaa < 1:1106888‑M1/76‑32 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt < 1:139399‑M1/35‑1 (MQ=255) gtTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatg > 1:774793‑M1/1‑43 (MQ=255) gtTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatg > 2:298521‑M1/1‑43 (MQ=255) ttCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatgg < 1:434697‑M1/76‑35 (MQ=255) tCAGCTTATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatgga < 1:305840‑M1/76‑36 (MQ=255) aGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaat < 1:1008299‑M1/76‑38 (MQ=255) gCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaata < 2:414814‑M1/76‑39 (MQ=255) gCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaata < 2:1395265‑M1/76‑39 (MQ=255) gCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTngtactgcacccattttgttggacgatgaaatggaata < 1:1439077‑M1/76‑39 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTgag > 1:809058‑M1/35‑76 (MQ=255) atatAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaataga < 2:167897‑M1/76‑41 (MQ=255) tataGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcc > 2:938751‑M1/1‑35 (MQ=255) gtttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGAc < 2:169074‑M1/44‑1 (MQ=255) ataGGGGGCCTCGGGTTGATAGTAAAATATCACTngtactgcnccnatnttgtcggatgatgaaatggaatagccc > 1:1279101‑M1/1‑34 (MQ=255) ttaactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAg < 2:1402213‑M1/46‑1 (MQ=255) taactgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGa < 2:933471‑M1/47‑1 (MQ=255) aGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccct < 1:386822‑M1/76‑45 (MQ=255) gggggCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagccccta < 1:975988‑M1/76‑46 (MQ=255) gggggCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagccccta < 2:1320731‑M1/76‑46 (MQ=255) actgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATa > 2:624030‑M1/28‑76 (MQ=255) actgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATa > 1:1135764‑M1/28‑76 (MQ=255) ctgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCNGCTAATGAGTNAGAAAGATAg > 2:1462126‑M1/27‑76 (MQ=255) ctgtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAg > 1:114398‑M1/27‑76 (MQ=255) gtccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTNATGCCTGAGACAGATAGcc < 1:790211‑M1/52‑1 (MQ=255) gtccaactttttggggtcagtacaACTCGGGGCTTTACTCTATCTACCGTTCAGCTAATGCATGAGACAGATAGcc < 1:31938‑M1/52‑1 (MQ=255) gCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatat < 2:569753‑M1/76‑50 (MQ=255) tccaactttttggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCt > 2:1357882‑M1/24‑76 (MQ=255) cTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgt < 1:609155‑M1/76‑52 (MQ=255) tCGGGTTGATAGTAAAATATCACTtgtactgcacccctttcgttggacgatgaaatggaatagcccctaatatgtc > 2:1173147‑M1/1‑24 (MQ=255) gTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaagagcccctaatatgtcaaag < 1:1252807‑M1/76‑57 (MQ=255) ttttggggtcagtanaACTCGGGGATTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCAc < 1:1581‑M1/60‑1 (MQ=255) ttGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagc < 1:619614‑M1/76‑58 (MQ=255) tggggtcagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACccg < 2:1413374‑M1/63‑1 (MQ=255) aGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaa > 1:1037787‑M1/1‑14 (MQ=255) aGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaa > 1:1017857‑M1/1‑14 (MQ=255) aGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaa > 2:392905‑M1/1‑14 (MQ=255) aGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaa > 2:324672‑M1/1‑14 (MQ=255) tAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaata < 2:1334390‑M1/76‑65 (MQ=255) cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCta < 2:365575‑M1/69‑1 (MQ=255) cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCta < 2:279049‑M1/69‑1 (MQ=255) aaaTATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacc > 1:491966‑M1/1‑10 (MQ=255) aaaTATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacc > 1:491956‑M1/1‑10 (MQ=255) acaACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCCCCCGCCGCtattat > 2:1406643‑M1/4‑76 (MQ=255) tCACTtgtactgcanccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaactccnctttt < 2:1483462‑M1/76‑72 (MQ=255) tCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccctttt < 2:1049322‑M1/76‑72 (MQ=255) cACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttg < 1:1127612‑M1/76‑73 (MQ=255) aacTtgtactgcacccattttgttggacgatgaaatggaatagaacctaatatgtcaaagccaaaataaccttttg > 1:259040‑M1/2‑4 (MQ=255) aCTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttga > 2:1002020‑M1/1‑3 (MQ=255) | TTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATC > REL606/16915‑17065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |