mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,361,453 | 0 | G | A | 53.6% | 1.4 / 105.0 | 69 | G34R (GGA→AGA) | yjeA | lysyl‑tRNA synthetase |
| * | REL606 | 4,201,904 | 0 | C | T | 46.6% | 24.7 / 133.3 | 88 | G219E (GGG→GAG) | iclR | DNA‑binding transcriptional repressor |
| * | REL606 | 3,492,082 | 0 | T | G | 45.7% | 38.0 / 17.6 | 35 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,484,105 | 0 | A | G | 41.4% | 32.1 / 13.0 | 29 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 2,296,329 | 0 | A | C | 39.1% | 70.1 / 20.9 | 46 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,875,483 | 0 | G | C | 32.7% | 184.4 / 92.2 | 101 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| * | REL606 | 1,747,903 | 0 | G | T | 21.7% | 188.5 / 33.4 | 69 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 4,393,061 | 0 | T | G | 20.9% | 164.3 / 14.1 | 67 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1830975 | 40 (0.820) | 3 (0.070) | 3/136 | 6.5 | 6.1% | coding (233/1359 nt) | ydjE | predicted transporter |
| ? | REL606 | 4151675 = | 56 (1.270) | coding (8/1029 nt) | murB | UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||