mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,004,106 | 0 | A | C | 50.0% | 46.9 / 21.8 | 46 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 2,296,329 | 0 | A | C | 47.7% | 38.5 / 34.1 | 44 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 3,492,082 | 0 | T | G | 47.6% | 46.7 / 21.1 | 42 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 4,393,061 | 0 | T | G | 40.0% | 37.7 / 11.2 | 30 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 2,174,648 | 0 | T | G | 32.7% | 97.0 / 17.6 | 52 | V409G (GTG→GGG) | dld | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
| * | REL606 | 1,795,650 | 0 | A | C | 31.4% | 103.0 / 14.4 | 51 | V39G (GTG→GGG) | celF | cryptic phospho‑beta‑glucosidase, NAD(P)‑binding |
| * | REL606 | 2,197,867 | 0 | T | G | 30.2% | 93.8 / 11.4 | 43 | A47A (GCA→GCC) | cirA | ferric iron‑catecholate outer membrane transporter |
| * | REL606 | 154,497 | 0 | T | G | 25.0% | 152.7 / 11.8 | 65 | A191A (GCA→GCC) | yadL | predicted fimbrial‑like adhesin protein |
| * | REL606 | 1,747,903 | 0 | G | T | 22.5% | 217.7 / 46.7 | 80 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 4,396,513 | 0 | C | G | 21.9% | 117.5 / 12.3 | 41 | S32S (TCG→TCC) | yjfQ | DNA‑binding transcriptional dual regulator |
| * | REL606 | 1,875,483 | 0 | G | C | 21.1% | 197.2 / 40.0 | 71 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3180864 = | 57 (1.010) | 4 (0.080) | 4/136 | 6.7 | 7.0% | coding (58/663 nt) | yqjA | conserved inner membrane protein |
| ? | REL606 | 3180885 = | 55 (1.080) | coding (79/663 nt) | yqjA | conserved inner membrane protein | |||||
| * | ? | REL606 | = 229868 | NA (NA) | 4 (0.080) | 4/138 | 6.8 | NA | noncoding (1281/2906 nt) | rrlH | 23S ribosomal RNA |
| ? | REL606 | = 229875 | NA (NA) | noncoding (1288/2906 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | REL606 | = 2234392 | 49 (0.870) | 3 (0.060) | 3/142 | 7.6 | 6.1% | coding (744/1008 nt) | yejK | nucleoid‑associated protein NdpA |
| ? | REL606 | = 2263367 | NA (NA) | noncoding (141/768 nt) | IS1 | repeat region | |||||
| * | ? | REL606 | = 768279 | 88 (1.560) | 4 (0.070) | 3/146 | 7.7 | 4.5% | intergenic (‑55/+147) | gpmA/galM | phosphoglyceromutase/galactose‑1‑epimerase (mutarotase) |
| ? | REL606 | = 768277 | 85 (1.550) | intergenic (‑53/+149) | gpmA/galM | phosphoglyceromutase/galactose‑1‑epimerase (mutarotase) | |||||
| * | ? | REL606 | = 440331 | 57 (1.010) | 3 (0.060) | 3/144 | 7.7 | 5.8% | intergenic (+34/‑119) | cof/ybaO | thiamin pyrimidine pyrophosphate hydrolase/predicted DNA‑binding transcriptional regulator |
| ? | REL606 | = 2495289 | 42 (0.780) | coding (543/702 nt) | eutQ | hypothetical protein | |||||