BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	REL606	4,349,332	Δ5 bp	intergenic (‑199/‑73)	yjeH ← / → groES	predicted transporter/co‑chaperonin GroES

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	4349332	4349336	5	49 [0]	[0] 49	yjeH/groES	predicted transporter/co‑chaperonin GroES

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 4349331	0 (0.000)	46 (0.880)	32/146	0.6	100%	intergenic (‑198/‑78)	yjeH/groES	predicted transporter/co‑chaperonin GroES
*	?	REL606	4349337 =	0 (0.000)	46 (0.880)	32/146	0.6	100%	intergenic (‑204/‑72)	yjeH/groES	predicted transporter/co‑chaperonin GroES

CGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTAT  >  REL606/4349262‑4349406

cGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagc                                                                       >  1:430049‑M1/1‑70 (MQ=255)

    tttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccggg                                                                   >  1:1035190‑M1/1‑66 (MQ=255)

    tttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccggg                                                                   >  1:159212‑M1/1‑66 (MQ=255)

       gtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaa                                                                <  1:1377410‑M1/76‑14 (MQ=255)

       gtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaa                                                                >  1:1371921‑M1/1‑63 (MQ=255)

          cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaacca                                                             <  1:1414750‑M1/76‑17 (MQ=255)

            gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacg                                                           >  2:1077326‑M1/1‑58 (MQ=255)

            gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacg                                                           >  2:7430‑M1/1‑58 (MQ=255)

             aTCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgt                                                          <  2:1098812‑M1/76‑20 (MQ=255)

                         tttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgt                                              >  1:1627104‑M1/1‑45 (MQ=255)

                           tctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtca                                            <  1:7924‑M1/76‑34 (MQ=255)

                            ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcac                                           >  1:1314127‑M1/1‑42 (MQ=255)

                            ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcac                                           >  1:1603561‑M1/1‑42 (MQ=255)

                             tttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacc                                          >  1:1043812‑M1/1‑41 (MQ=255)

                              ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcaccc                                         >  1:828949‑M1/1‑40 (MQ=255)

                                ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccat                                       >  1:481832‑M1/1‑38 (MQ=255)

                                ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccat                                       >  2:1293227‑M1/1‑38 (MQ=255)

                                 tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccata                                      >  1:399471‑M1/1‑37 (MQ=255)

                                 tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccata                                      >  2:986427‑M1/1‑37 (MQ=255)

                                 tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccata                                      >  2:1599745‑M1/1‑37 (MQ=255)

                                  cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaagccacgtaagctccggcgtcacccataa                                     >  1:338663‑M1/1‑36 (MQ=255)

                                   ccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataac                                    <  2:1080760‑M1/76‑42 (MQ=255)

                                        ttaaggGGCAAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagata                               <  1:781483‑M1/74‑47 (MQ=255)

                                        tGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagata                               >  1:852763‑M1/1‑30 (MQ=255)

                                        tGAAGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagata                               <  1:1216856‑M1/76‑47 (MQ=255)

                                          aaGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacg                             <  1:602644‑M1/76‑49 (MQ=255)

                                          aaGGGGCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacg                             <  1:1003756‑M1/76‑49 (MQ=255)

                                            ggggCGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacgga                           <  1:956995‑M1/76‑51 (MQ=255)

                                                cGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggacttt                       <  1:1006899‑M1/76‑55 (MQ=255)

                                                cGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggacttt                       <  2:328221‑M1/76‑55 (MQ=255)

                                                cGAAGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggacttt                       >  2:323549‑M1/1‑22 (MQ=255)

                                                  aaGCCTCATCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttct                     <  1:485737‑M1/76‑57 (MQ=255)

                                                          tCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggag             >  1:1075526‑M1/1‑12 (MQ=255)

                                                          tCCCCATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggag             <  2:659739‑M1/76‑65 (MQ=255)

                                                           ccccATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggaga            >  1:318052‑M1/1‑11 (MQ=255)

                                                           ccccATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggaga            >  2:608113‑M1/1‑11 (MQ=255)

                                                           ccccATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggaga            >  2:338271‑M1/1‑11 (MQ=255)

                                                              cATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggagagtt         <  1:379977‑M1/76‑69 (MQ=255)

                                                              cATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggagagtt         >  1:349768‑M1/1‑8 (MQ=255)

                                                              cATTTCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggagagtt         <  2:385227‑M1/76‑69 (MQ=255)

                                                                tttCTCaccagccgtgaaaccacgtaagctccggcgtaaccaataacatataaggactttctcaaaggatatttat       >  2:1277072‑M1/1‑6 (MQ=255)

                                                                tttCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggagagttat       >  2:1277062‑M1/1‑6 (MQ=255)

                                                                tttCTCaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggagagttat       <  2:530093‑M1/76‑71 (MQ=255)

                                                                  tctcaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggagagttatca     <  1:844175‑M1/76‑73 (MQ=255)

                                                                   ctcaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggagagttatcaa    <  2:1448988‑M1/76‑74 (MQ=255)

                                                                   ctcaccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggagagttatcaa    <  1:605856‑M1/76‑74 (MQ=255)

                                                                     caccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggagagttatcaatg  >  1:585220‑M1/1‑1 (MQ=255)

                                                                     caccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggagagttatcaatg  <  1:1668559‑M1/76‑76 (MQ=255)

                                                                     caccagccgggaaaccacgtaagctccggcgtcacccataacagatacggactttctcaaaggagagttatcaatg  <  1:1668580‑M1/76‑76 (MQ=255)

CGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTAT  >  REL606/4349262‑4349406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`