mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,497,049 | 0 | T | G | 44.1% | 31.0 / 12.6 | 34 | H133P (CAC→CCC) | fecD | iron‑dicitrate transporter subunit |
| * | REL606 | 3,492,082 | 0 | T | G | 42.5% | 57.0 / 23.3 | 48 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 2,231,892 | 0 | A | C | 37.8% | 73.8 / 12.9 | 45 | T25P (ACC→CCC) | yejH | predicted ATP‑dependet helicase |
| * | REL606 | 2,631,772 | 0 | A | C | 33.3% | 102.1 / 12.9 | 48 | intergenic (‑267/‑141) | rpoE/nadB | RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase |
| * | REL606 | 1,747,903 | 0 | G | T | 31.6% | 145.9 / 67.2 | 76 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 1,004,106 | 0 | A | C | 31.2% | 136.0 / 14.1 | 64 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 3,733,719 | 0 | C | G | 30.0% | 88.4 / 18.7 | 40 | G63G (GGC→GGG) | gumD | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
| * | REL606 | 4,393,061 | 0 | T | G | 28.9% | 89.6 / 14.2 | 45 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 2,296,329 | 0 | A | C | 24.1% | 142.6 / 18.7 | 58 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,875,483 | 0 | G | C | 21.5% | 255.1 / 58.5 | 93 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1713928 = | 48 (0.840) | 3 (0.060) | 3/136 | 7.3 | 6.3% | pseudogene (239/779 nt) pseudogene (630/1167 nt) |
ydhP ydhP |
putative transport protein (MFS family); b1657_1 putative transport protein (MFS family); b1657_1 |
| ? | REL606 | 2092104 = | 46 (0.890) | coding (611/3078 nt) | yegO | multidrug efflux system, subunit C | |||||
| * | ? | REL606 | 2092097 = | 49 (0.860) | 3 (0.060) | 3/138 | 7.4 | 5.9% | coding (604/3078 nt) | yegO | multidrug efflux system, subunit C |
| ? | REL606 | = 4629655 | 50 (0.950) | coding (554/687 nt) | lasT | predicted rRNA methyltransferase | |||||