mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 475,131 | C→T | E59K (GAA→AAA) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| RA | 649,601 | T→C | I401V (ATC→GTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 1,306,225 | A→T | Y5* (TAT→TAA) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| RA | 1,689,712 | (C)6→7 | intergenic (+360/‑251) | nth → / → ydgR | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/putative tripeptide transporter permease |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 1,738,310 | C→T | G250D (GGC→GAC) | sufD ← | component of SufBCD complex |
| RA | 2,036,374 | (A)9→8 | coding (585/1113 nt) | wbbC ← | putative glycosyltransferase WbbC |
| JC | 2,103,918 | (CCAG)7→8 | coding (185/216 nt) | ECB_01992 → | hypothetical protein |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,616,302 | (G)7→6 | intergenic (‑42/‑354) | purL ← / → yfhD | phosphoribosylformylglycinamidine synthase/putative periplasmic binding protein of transport system; b2558_1 |
| RA | 2,775,881 | +T | intergenic (‑51/+198) | insJ‑3 ← / ← cysH | IS150 hypothetical protein/phosphoadenosine phosphosulfate reductase |
| RA | 3,145,985 | T→G | I41S (ATC→AGC) | rpoD → | RNA polymerase sigma factor |
| RA | 3,414,656 | A→C | *211S (TAA→TCA) | crp → | DNA‑binding transcriptional dual regulator |
| RA | 3,497,167 | A→G | V290A (GTT→GCT) | glgP ← | glycogen phosphorylase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 4,165,612 | A→C | T218P (ACC→CCC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | 4,203,168 | +A | coding (410/3684 nt) | metH → | B12‑dependent methionine synthase |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |