mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,492,082 | 0 | T | G | 50.0% | 28.1 / 22.9 | 36 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,875,483 | 0 | G | C | 38.3% | 133.7 / 132.2 | 107 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| * | REL606 | 2,231,892 | 0 | A | C | 37.8% | 58.5 / 14.3 | 37 | T25P (ACC→CCC) | yejH | predicted ATP‑dependet helicase |
| * | REL606 | 4,393,061 | 0 | T | G | 30.3% | 59.5 / 12.0 | 33 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 1,004,106 | 0 | A | C | 30.0% | 104.7 / 11.8 | 50 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 4,574,252 | 0 | T | G | 27.8% | 77.6 / 13.0 | 36 | S5S (TCA→TCC) | hpaX | hypothetical 4‑hydroxyphenylacetate permease |
| * | REL606 | 1,747,903 | 0 | G | T | 26.2% | 238.0 / 58.3 | 84 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 2,296,329 | 0 | A | C | 25.4% | 127.7 / 19.1 | 55 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 2,969,487 | 0 | C | G | 25.0% | 107.3 / 13.9 | 48 | R21P (CGC→CCC) | speB | agmatinase |
| * | REL606 | 1,176,010 | 0 | T | G | 24.2% | 148.3 / 14.0 | 62 | A37A (GCA→GCC) | fhuE | ferric‑rhodotorulic acid outer membrane transporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3171156 | 60 (1.120) | 4 (0.090) | 4/130 | 5.7 | 7.3% | intergenic (+42/‑241) | ygjR/ygjT | predicted NAD(P)‑binding dehydrogenase/predicted inner membrane protein, part of terminus |
| ? | REL606 | = 3171165 | 50 (1.080) | intergenic (+51/‑232) | ygjR/ygjT | predicted NAD(P)‑binding dehydrogenase/predicted inner membrane protein, part of terminus | |||||
| * | ? | REL606 | 581878 = | 50 (0.930) | 3 (0.060) | 3/134 | 6.4 | 7.0% | coding (2262/3144 nt) | cusA | copper/silver efflux system, membrane component |
| ? | REL606 | = 3625423 | 35 (0.730) | pseudogene (40/738 nt) | yhjQ | b3534; cell division protein (chromosome partitioning ATPase) | |||||