mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 474,186 | T→A | I374F (ATC→TTC) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| JC JC | 1,305,418 | IS150 (–) +3 bp | coding (820‑822/1461 nt) | cls ← | cardiolipin synthetase |
| RA | 1,329,281 | C→G | intergenic (‑241/‑139) | yciN ← / → topA | hypothetical protein/DNA topoisomerase I |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,360,241 | G→A | V635I (GTT→ATT) | pta → | phosphate acetyltransferase |
| RA | 2,897,276 | C→T | Q21* (CAA→TAA) | yqeA → | predicted amino acid kinase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,928,259 | A→T | I15F (ATC→TTC) | rho → | transcription termination factor Rho |
| RA | 4,103,979 | T→A | intergenic (‑40/+116) | cytR ← / ← priA | DNA‑binding transcriptional dual regulator/primosome assembly protein PriA |
| RA | 4,202,096 | G→A | P155L (CCG→CTG) | iclR ← | DNA‑binding transcriptional repressor |
| RA | 4,479,649 | C→T | noncoding (17/85 nt) | leuX → | tRNA‑Leu |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2032380–2032460 | 2041713 | 9254–9334 | 16 [14] | [15] 16 | [manB]–[wzx] | [manB],manC,insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,[wzx] |
| * | * | ÷ | REL606 | 2041742 | 2055702–2055576 | 13835–13961 | 16 [15] | [15] 16 | [wzx]–[cpsG] | [wzx],rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ,[cpsG] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3651091 = | NA (NA) | 57 (1.100) | 43/144 | 0.2 | NA | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3907731 = | NA (NA) | noncoding (2230/2906 nt) | rrlC | 23S ribosomal RNA | |||||
| * | ? | REL606 | = 3894996 | NA (NA) | 75 (1.410) | 55/148 | 0.0 | NA | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 3907733 | NA (NA) | noncoding (2232/2906 nt) | rrlC | 23S ribosomal RNA | |||||