Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | REL606 | 1,290,853 | Δ92 bp | coding (818‑909/1014 nt) | hnr → | response regulator of RpoS |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 1290853 | 1290944 | 92 | 62 [0] | [0] 62 | hnr | response regulator of RpoS |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1290852 | 0 (0.000) | 62 (1.290) | 44/148 | 0.1 | 100% | coding (817/1014 nt) | hnr | response regulator of RpoS |
? | REL606 | 1290945 = | 0 (0.000) | coding (910/1014 nt) | hnr | response regulator of RpoS |
AAACCATTTACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAAT > REL606/1290779‑1290926 | aaaCCATTTACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAtt > 2:1275107‑M1/1‑74 (MQ=255) aaCCATTTACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAtta > 2:7136‑M1/1‑73 (MQ=255) aCCATTTACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttag < 2:421707‑M1/76‑5 (MQ=255) cATTTACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggt > 1:1369870‑M1/1‑70 (MQ=255) aTTTACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggta > 1:1002778‑M1/1‑69 (MQ=255) aTTTACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggta > 1:1108588‑M1/1‑69 (MQ=255) aTTTACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggta > 1:1108580‑M1/1‑69 (MQ=255) tttACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaa < 1:1432462‑M1/76‑9 (MQ=255) ttACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaac > 1:592331‑M1/1‑67 (MQ=255) tACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacg > 1:702753‑M1/1‑66 (MQ=255) tACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacg < 1:1165341‑M1/76‑11 (MQ=255) tACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacg < 1:986‑M1/76‑11 (MQ=255) tACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacg > 1:424785‑M1/1‑66 (MQ=255) tACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacg > 1:424799‑M1/1‑66 (MQ=255) ccGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgctta > 2:861338‑M1/1‑62 (MQ=255) ccGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgctta < 1:1025614‑M1/76‑15 (MQ=255) tccggccaATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttattt < 2:694537‑M1/73‑18 (MQ=255) tCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttattt > 2:1028739‑M1/1‑59 (MQ=255) tCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttattt > 2:510399‑M1/1‑59 (MQ=255) tCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttattt < 2:1117777‑M1/76‑18 (MQ=255) tCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttattt > 2:754821‑M1/1‑59 (MQ=255) aGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttga < 2:1015953‑M1/76‑20 (MQ=255) gCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaat < 2:331894‑M1/76‑22 (MQ=255) cAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatca < 2:1018641‑M1/76‑24 (MQ=255) cAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatca > 1:919963‑M1/1‑53 (MQ=255) aaTCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaa < 1:367286‑M1/76‑25 (MQ=255) cTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattg > 1:981243‑M1/1‑49 (MQ=255) gggCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccag > 1:840151‑M1/1‑43 (MQ=255) gggCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccag < 1:95938‑M1/76‑34 (MQ=255) gCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcg > 1:609696‑M1/1‑41 (MQ=255) aGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgat > 1:1161477‑M1/1‑39 (MQ=255) gTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatg < 2:919963‑M1/76‑39 (MQ=255) tttCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgc > 2:184436‑M1/1‑37 (MQ=255) tCCGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcga > 1:507767‑M1/1‑35 (MQ=255) ccGCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgat < 2:1020676‑M1/76‑43 (MQ=255) gCTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgc > 1:1134866‑M1/1‑32 (MQ=255) cTATTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcc > 2:1401872‑M1/1‑31 (MQ=255) aTTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctg < 2:84099‑M1/76‑48 (MQ=255) aTTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctg < 2:1074239‑M1/76‑48 (MQ=255) aTTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctg > 2:957407‑M1/1‑29 (MQ=255) aTTAGTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctg < 1:470208‑M1/76‑48 (MQ=255) gTTGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaa > 1:598539‑M1/1‑25 (MQ=255) tGGCTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatg > 1:795679‑M1/1‑23 (MQ=255) cTATTATCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgcca > 2:261363‑M1/1‑20 (MQ=255) tattatCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaa > 2:125293‑M1/1‑19 (MQ=255) tattatCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaa > 2:746525‑M1/1‑19 (MQ=255) ttatCATCGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaat < 1:467288‑M1/76‑60 (MQ=255) atcatcGCGAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatat < 1:1002726‑M1/76‑62 (MQ=255) gcgAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaa < 2:1210370‑M1/76‑68 (MQ=255) cgAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaac > 2:350986‑M1/1‑8 (MQ=255) gAACTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaacc > 2:537613‑M1/1‑7 (MQ=255) cTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaaccggt > 1:556429‑M1/1‑4 (MQ=255) cTGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaaccggt > 1:1472775‑M1/1‑4 (MQ=255) tGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaaccggtg > 1:597520‑M1/1‑3 (MQ=255) tGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaaccggtg > 1:710988‑M1/1‑3 (MQ=255) tGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaaccggtg > 1:353573‑M1/1‑3 (MQ=255) tGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaaccggtg < 2:667872‑M1/76‑74 (MQ=255) tGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaaccggtg > 1:389081‑M1/1‑3 (MQ=255) tGAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaaccggag > 1:41812‑M1/1‑3 (MQ=255) gAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaaccggtgg > 2:829098‑M1/1‑2 (MQ=255) gAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaaccggtgg > 2:1198924‑M1/1‑2 (MQ=255) gAttaggtaacgcttatttgaatcaattgagccagcgatgcgatgcctggcaatgccaaatatggggaaccggctc > 2:960746‑M1/1‑2 (MQ=255) | AAACCATTTACTCCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAAT > REL606/1290779‑1290926 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |