mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,492,082 | 0 | T | G | 39.5% | 60.1 / 13.1 | 38 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,747,903 | 0 | G | T | 39.4% | 93.8 / 73.8 | 66 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 2,296,329 | 0 | A | C | 32.9% | 161.3 / 38.7 | 82 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,688,990 | 0 | A | C | 29.6% | 120.9 / 16.7 | 54 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| * | REL606 | 1,004,106 | 0 | A | C | 29.3% | 163.2 / 11.6 | 76 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 4,169,232 | 0 | A | T | 28.6% | 121.0 / 12.9 | 56 | intergenic (+48/‑165) | rpoC/htrC | DNA‑directed RNA polymerase subunit beta'/heat shock protein |
| * | REL606 | 2,877,077 | 0 | A | C | 27.3% | 140.5 / 19.2 | 66 | intergenic (‑274/+41) | araE/kduD | arabinose transporter/2‑deoxy‑D‑gluconate 3‑dehydrogenase |
| * | REL606 | 1,416,838 | 0 | T | G | 27.1% | 161.8 / 23.3 | 85 | intergenic (+1/‑4) | ECB_01334/ECB_01335 | putative Lysozyme/conserved hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2426607 | 67 (1.300) | 4 (0.100) +AGATGATTACATCGC |
4/120 | 4.2 | 7.8% | coding (875/1251 nt) | yfdW | formyl‑coenzyme A transferase |
| ? | REL606 | = 3722470 | 52 (1.010) | intergenic (+16/+37) | yibK/cysE | predicted rRNA methylase/serine acetyltransferase | |||||
| * | ? | REL606 | = 3731065 | 84 (1.620) | 3 (0.070) | 3/132 | 5.0 | 4.4% | intergenic (‑218/+21) | yibD/tdh | predicted glycosyl transferase/L‑threonine 3‑dehydrogenase |
| ? | REL606 | = 3731069 | 56 (1.230) | intergenic (‑222/+17) | yibD/tdh | predicted glycosyl transferase/L‑threonine 3‑dehydrogenase | |||||
| * | ? | REL606 | 3303564 = | 53 (1.030) | 3 (0.070) | 3/134 | 5.0 | 5.8% | coding (798/1368 nt) | dcuD | predicted transporter |
| ? | REL606 | 3303584 = | 50 (1.080) | coding (818/1368 nt) | dcuD | predicted transporter | |||||
| * | ? | REL606 | 3303564 = | 53 (1.030) | 3 (0.060) | 3/144 | 5.3 | 5.9% | coding (798/1368 nt) | dcuD | predicted transporter |
| ? | REL606 | = 4448682 | 44 (0.890) | coding (776/1422 nt) | treB | fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component | |||||
| * | ? | REL606 | 3303564 = | 53 (1.030) | 3 (0.060) | 3/144 | 5.3 | 6.2% | coding (798/1368 nt) | dcuD | predicted transporter |
| ? | REL606 | 3335535 = | 40 (0.810) | coding (38/1452 nt) | panF | sodium/panthothenate symporter | |||||