mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,484,105 | 0 | A | G | 34.9% | 59.2 / 21.7 | 43 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 273,581 | 0 | T | G | 33.9% | 91.2 / 12.7 | 56 | G136G (GGT→GGG) | yagU | conserved inner membrane protein |
| * | REL606 | 3,492,082 | 0 | T | G | 32.6% | 92.7 / 15.5 | 49 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 2,296,329 | 0 | A | C | 27.9% | 137.7 / 19.5 | 61 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,795,650 | 0 | A | C | 20.0% | 125.7 / 10.3 | 50 | V39G (GTG→GGG) | celF | cryptic phospho‑beta‑glucosidase, NAD(P)‑binding |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3737604 = | 79 (1.400) | 5 (0.090) | 4/142 | 6.0 | 5.4% | coding (223/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | 3737757 = | 101 (1.900) | coding (70/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| * | ? | REL606 | 3563585 = | 60 (1.070) | 3 (0.060) | 3/134 | 6.3 | 4.7% | coding (1563/1608 nt) | yhiKL | hypothetical protein |
| ? | REL606 | 3563785 = | 68 (1.360) | coding (1363/1608 nt) | yhiKL | hypothetical protein | |||||
| * | ? | REL606 | 2041054 = | 75 (1.330) | 3 (0.060) | 3/136 | 6.3 | 4.6% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 57 (1.120) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | = 2040186 | 58 (1.030) | 6 (0.110) | 3/140 | 6.4 | 10.9% | intergenic (‑58/+85) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | = 2040466 | 44 (0.840) | coding (918/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| * | ? | REL606 | = 799331 | 129 (2.290) | 4 (0.080) | 3/140 | 6.4 | 4.0% | intergenic (‑56/+728) | ECB_00739/ybhB | hypothetical protein/predicted kinase inhibitor |
| ? | REL606 | = 799578 | 73 (1.390) | intergenic (‑303/+481) | ECB_00739/ybhB | hypothetical protein/predicted kinase inhibitor | |||||
| * | ? | REL606 | 540691 = | 116 (2.060) | 3 (0.050) | 3/150 | 6.7 | 2.5% | intergenic (+154/‑101) | emrE/ybcK | multidrug efflux protein/predicted recombinase |
| ? | REL606 | 540915 = | 122 (2.170) | coding (124/1527 nt) | ybcK | predicted recombinase | |||||