breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	REL606	3,497,643	0	A	C	41.5%	18.5 / 62.2	41	A131A (GCT→GCG)	glgP	glycogen phosphorylase
*	REL606	3,492,082	0	T	G	33.3%	141.8 / 25.9	76	V490G (GTG→GGG)	glpD	sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding
*	REL606	154,497	0	T	G	31.7%	75.3 / 13.1	41	A191A (GCA→GCC)	yadL	predicted fimbrial‑like adhesin protein
*	REL606	1,747,903	0	G	T	27.3%	176.7 / 55.2	77	A8S (GCA→TCA)	ydiL	hypothetical protein
*	REL606	4,443,003	0	T	A	25.0%	36.7 / 10.6	20	pseudogene (175/303 nt)	cybC	b4236; cytochrome b562
*	REL606	4,169,232	0	A	T	22.4%	113.3 / 11.5	49	intergenic (+48/‑165)	rpoC/htrC	DNA‑directed RNA polymerase subunit beta'/heat shock protein
*	REL606	3,497,661	0	G	A	20.6%	83.1 / 10.1	34	G125G (GGC→GGT)	glgP	glycogen phosphorylase

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2036832 =	26 (0.660)	4 (0.110)	3/136	4.5	11.8%	coding (127/1113 nt)	wbbC	putative glycosyltransferase WbbC
	?	REL606	2037060 =	36 (1.010)					coding (1071/1176 nt)	wzy	O antigen polymerase (Wzy)
*	?	REL606	2037389 =	30 (0.760)	3 (0.080)	3/142	4.7	7.9%	coding (742/1176 nt)	wzy	O antigen polymerase (Wzy)
	?	REL606	2037953 =	42 (1.120)					coding (178/1176 nt)	wzy	O antigen polymerase (Wzy)