mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_010468 | 4,093,564 | 0 | A | C | 56.7% | 131.0 / 259.6 | 210 | V380G (GTT→GGT) | uxuA | mannonate dehydratase |
| * | NC_010468 | 1,836,970 | 0 | A | G | 20.3% | 1290.8 / 199.8 | 575 | pseudogene (3479/4242 nt) | ECOLC_RS08830 | DUF4329 domain‑containing protein |
| Marginal new junction evidence (lowest skew 10 of 46 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010468 | 3432161 = | 767 (0.940) | 110 (0.140) +GAAGGCGTTTACGCT |
28/564 | 3.9 | 14.0% | intergenic (+82/+840) | copA/ECOLC_RS16850 | copper‑exporting P‑type ATPase CopA/HigA family addiction module antidote protein |
| ? | NC_010468 | = 3432953 | 659 (0.800) | intergenic (+874/+48) | copA/ECOLC_RS16850 | copper‑exporting P‑type ATPase CopA/HigA family addiction module antidote protein | |||||
| * | ? | NC_010468 | = 973100 | 267 (0.330) | 12 (0.020) | 12/428 | 4.7 | 5.9% | intergenic (‑2/+32) | ECOLC_RS04800/ECOLC_RS04805 | tRNA‑Met/tRNA‑Met |
| ? | NC_010468 | 973321 = | 191 (0.320) | intergenic (‑3/‑206) | ECOLC_RS04810/mltA | tRNA‑Met/murein transglycosylase A | |||||
| * | ? | NC_010468 | = 4036702 | 446 (0.540) | 8 (0.010) | 8/416 | 5.2 | 2.3% | intergenic (+1/‑28) | ECOLC_RS19810/ECOLC_RS19815 | tRNA‑Leu/tRNA‑Leu |
| ? | NC_010468 | 4036939 = | 357 (0.620) | intergenic (+2/+37) | ECOLC_RS19820/ECOLC_RS19825 | tRNA‑Leu/DUF1435 domain‑containing protein | |||||
| * | ? | NC_010468 | = 4420146 | 545 (0.670) | 12 (0.020) +54 bp |
9/486 | 5.3 | 2.6% | intergenic (‑7/+170) | rrf/ECOLC_RS21605 | 5S ribosomal RNA/23S ribosomal RNA |
| ? | NC_010468 | 4420294 = | NA (NA) | intergenic (‑155/+22) | rrf/ECOLC_RS21605 | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NC_010468 | 1591575 = | 596 (0.730) | 71 (0.100) +50 bp |
8/494 | 5.4 | 11.4% | intergenic (+136/+581) | mqo/eco | malate dehydrogenase (quinone)/serine protease inhibitor ecotin |
| ? | NC_010468 | = 1592089 | 735 (0.900) | intergenic (+650/+67) | mqo/eco | malate dehydrogenase (quinone)/serine protease inhibitor ecotin | |||||
| * | ? | NC_010468 | 1591592 = | 592 (0.720) | 28 (0.040) +44 bp |
7/506 | 5.6 | 4.7% | intergenic (+153/+564) | mqo/eco | malate dehydrogenase (quinone)/serine protease inhibitor ecotin |
| ? | NC_010468 | = 1592112 | 741 (0.900) | intergenic (+673/+44) | mqo/eco | malate dehydrogenase (quinone)/serine protease inhibitor ecotin | |||||
| * | ? | NC_010468 | 471393 = | 497 (0.610) | 12 (0.020) +53 bp |
6/488 | 5.8 | 2.9% | intergenic (+32/‑8) | ECOLC_RS02310/rrf | tRNA‑Thr/5S ribosomal RNA |
| ? | NC_010468 | 3771124 = | NA (NA) | intergenic (‑155/+22) | rrf/ECOLC_RS18580 | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NC_010468 | 3125489 = | 248 (0.300) | 6 (0.010) | 6/590 | 6.0 | 1.3% | coding (119/714 nt) | ECOLC_RS15320 | Bax inhibitor‑1/YccA family protein |
| ? | NC_010468 | = 3140481 | 660 (0.810) | intergenic (‑54/‑35) | ECOLC_RS25480/ECOLC_RS25940 | IS1 family transposase/protease FtsH‑inhibitory lysogeny factor CIII | |||||
| * | ? | NC_010468 | 1591575 = | 597 (0.730) | 30 (0.040) +53 bp |
4/488 | 6.2 | 5.2% | intergenic (+136/+581) | mqo/eco | malate dehydrogenase (quinone)/serine protease inhibitor ecotin |
| ? | NC_010468 | = 1592086 | 731 (0.890) | intergenic (+647/+70) | mqo/eco | malate dehydrogenase (quinone)/serine protease inhibitor ecotin | |||||
| * | ? | NC_010468 | = 270764 | 586 (0.720) | 6 (0.010) | 5/584 | 6.2 | 1.0% | coding (3505/4236 nt) | ECOLC_RS01250 | RHS repeat protein |
| ? | NC_010468 | 272808 = | NA (NA) | coding (1461/4236 nt) | ECOLC_RS01250 | RHS repeat protein | |||||