mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 166,580 | A→G | S376G (AGC→GGC) | xylB → | xylulokinase |
| RA | 261,688 | C→A | D273E (GAC→GAA) | ECOLC_RS01210 → | DUF4049 domain‑containing protein |
| RA | 269,146 | C→G | intergenic (‑64/+182) | ECOLC_RS01230 ← / ← ECOLC_RS01240 | ISAs1 family transposase/hypothetical protein |
| RA | 340,142 | T→G | R595S (AGA→AGC) | malT ← | HTH‑type transcriptional regulator MalT |
| RA | 770,649 | G→T | P188T (CCC→ACC) | ECOLC_RS03815 ← | fatty acyl‑AMP ligase |
| MC JC | 922,809 | Δ776 bp | [ECOLC_RS04555]–[ECOLC_RS04565] | [ECOLC_RS04555], ECOLC_RS04560, [ECOLC_RS04565] | |
| RA | 991,839 | T→A | Q213L (CAG→CTG) | ECOLC_RS04900 ← | HAAAP family serine/threonine permease |
| RA | 1,344,434 | T→G | intergenic (+19/‑198) | eutG → / → eutH | ethanolamine utilization ethanol dehydrogenase EutG/ethanolamine utilization protein EutH |
| RA | 1,558,271 | C→A | A391D (GCC→GAC) | gyrA → | DNA topoisomerase (ATP‑hydrolyzing) subunit A |
| RA | 1,812,310 | T→A | intergenic (‑135/‑74) | sbcB ← / → dacD | exodeoxyribonuclease I/serine‑type D‑Ala‑D‑Ala carboxypeptidase DacD |
| RA | 1,857,679 | Δ1 bp | pseudogene (5724/7076 nt) | yeeJ ← | inverse autotransporter adhesin YeeJ |
| RA | 2,095,752 | A→C | I93L (ATA→CTA) | chbC → | PTS N,N'‑diacetylchitobiose transporter subunit IIC |
| RA | 2,134,320 | T→C | Q325Q (CAA→CAG) | ECOLC_RS10385 ← | FAD‑dependent oxidoreductase |
| RA | 2,170,196 | G→A | noncoding (61/77 nt) | ECOLC_RS10560 ← | tRNA‑Val |
| RA | 2,224,998 | T→C | W393R (TGG→CGG) | uidC → | glucuronide uptake porin UidC |
| RA | 2,423,171 | G→A | G40G (GGC→GGT) | ECOLC_RS11800 ← | ISAs1‑like element ISEc1 family transposase |
| MC JC | 2,624,634 | Δ3 bp | coding (810‑812/1632 nt) | oppA ← | oligopeptide ABC transporter substrate‑binding protein OppA |
| RA | 2,625,746 | A→C | intergenic (‑301/+437) | oppA ← / ← ychE | oligopeptide ABC transporter substrate‑binding protein OppA/NAAT family transporter YchE |
| RA | 3,076,597 | T→C | R342G (AGA→GGA) | gsiB ← | glutathione ABC transporter substrate‑binding protein GsiB |
| RA | 3,226,560 | C→G | L53L (CTG→CTC) | ECOLC_RS15880 ← | RHS repeat protein |
| RA | 3,226,566 | C→G | P51P (CCG→CCC) | ECOLC_RS15880 ← | RHS repeat protein |
| RA | 3,634,742 | C→T | R231H (CGT→CAT) | ECOLC_RS17815 ← | (Fe‑S)‑binding protein |
| RA | 3,646,188 | T→C | intergenic (+395/‑80) | ECOLC_RS25550 → / → ECOLC_RS17850 | oxidoreductase/hypothetical protein |
| RA | 3,793,428 | G→C | L414V (CTT→GTT) | dnaE ← | DNA polymerase III subunit alpha |
| RA | 3,994,829 | C→T | A163V (GCG→GTG) | ECOLC_RS19585 → | sodium:alanine symporter family protein |
| RA | 4,271,660 | A→C | pseudogene (118/698 nt) | ECOLC_RS20935 → | IS1 family transposase |
| RA | 4,287,467 | A→C | G109G (GGA→GGC) | ECOLC_RS21005 → | class I fumarate hydratase |
| RA | 4,341,889 | G→A | P170L (CCC→CTC) | ECOLC_RS21260 ← | heme lyase CcmF/NrfE family subunit |
| RA | 4,419,877 | 2 bp→GT | intergenic (+148/‑46) | ECOLC_RS21595 → / → ECOLC_RS26070 | acetyltransferase/paraslipin |
| RA | 4,644,660 | G→A | L330L (TTG→TTA) | hemY → | protoheme IX biogenesis protein HemY |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010468 | 3031203 = | 318 (0.390) | 256 (0.330) | 210/568 | 0.9 | 46.2% | coding (38/531 nt) | ECOLC_RS14815 | tail fiber protein |
| ? | NC_010468 | 3033060 = | 293 (0.370) | coding (1048/1422 nt) | ECOLC_RS14830 | phage tail protein | |||||
| * | ? | NC_010468 | = 3031215 | 319 (0.390) | 181 (0.230) | 154/568 | 1.4 | 37.7% | coding (50/531 nt) | ECOLC_RS14815 | tail fiber protein |
| ? | NC_010468 | = 3033046 | 293 (0.370) | coding (1062/1422 nt) | ECOLC_RS14830 | phage tail protein | |||||