breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation freq annotation gene description
RA BX571857 431,505 T→C 10.9% S77P (TCA→CCA)  SAS0387 → exotoxin
RA BX571857 629,811 G→T 7.0% intergenic (+506/‑81) SAS0548 → / → SAS0549 lipoate‑protein ligase A protein/mevalonate kinase
RA BX571857 1,222,841 T→A 20.3% I360N (ATT→AAT)  SAS1146 → primosomal protein n'
RA BX571857 1,252,438 T→C 100% intergenic (+358/‑77) SAS1171 → / → SAS1172 signal recognition particle protein/30S ribosomal protein S16
RA BX571857 1,868,342 G→A 100% G129D (GGT→GAT)  SAS1720 → putative membrane protein
RA BX571857 2,232,539 G→A 87.3% noncoding (424/2923 nt) unknown ←
RA BX571857 2,534,899 A→G 9.2% G81G (GGT→GGC SAS2368 ← putative exported protein
RA BX571857 2,700,266 A→G 11.7% S734S (AGT→AGC SAS2516 ← fibrinogen and keratin‑10 binding surface anchored protein
RA BX571858 20,628:1 +G 100% coding (288/306 nt) pSAS24 → putative exported protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ BX571858 20652 20652 1 248 [0] [0] NA pSAS24/– putative exported protein/–

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BX571857 980997 =NA (NA)18 (0.310) 17/118 NT NA noncoding (1/27 nt) Repeat flanking prophage phiSa4(476) Repeat flanking prophage phiSa4(476)
?BX571857 = 1025750 NA (NA)intergenic (+519/‑57) SAS0954/SAS0955 amidase/putative protease
* ? BX571858 1 =0 (0.000)219 (1.140) 110/170 NT 100% intergenic (–/‑11) –/pSAS01 –/putative ABC transporter ATP binding protein
?BX571858 = 20651 0 (0.000)intergenic (+5/–) pSAS24/– putative exported protein/–