mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 91 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,741,277 | 0 | C | T | 73.0% | 59.8 / 17.0 | 38 | intergenic (+468/+284) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,273 | 1 | . | C | 68.4% | 85.2 / 39.5 | 38 | intergenic (+464/+288) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,275 | 0 | A | G | 68.4% | 44.2 / 23.2 | 38 | intergenic (+466/+286) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 699,725 | 0 | A | G | 58.8% | 34.9 / 74.2 | 69 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 4,741,298 | 1 | . | T | 53.5% | 79.4 / 69.5 | 43 | intergenic (+489/+263) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,302 | 0 | A | G | 53.5% | 12.2 / 45.4 | 43 | intergenic (+493/+259) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,305 | 0 | A | . | 53.5% | ‑6.5 / 94.4 | 43 | intergenic (+496/+256) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,348,749 | 0 | A | G | 52.1% | ‑6.4 / 90.9 | 73 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 1,327,127 | 0 | C | T | 48.3% | 25.5 / 123.9 | 89 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 4,741,301 | 0 | A | C | 46.5% | 6.5 / 53.6 | 43 | intergenic (+492/+260) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,299 | 0 | C | T | 45.2% | 20.2 / 38.7 | 43 | intergenic (+490/+262) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,304 | 0 | C | G | 45.2% | 15.8 / 56.0 | 43 | intergenic (+495/+257) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 2,282,813 | 0 | T | G | 39.6% | 59.0 / 122.0 | 96 | intergenic (‑162/+67) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| * | NC_002947 | 5,988,961 | 0 | T | C | 38.5% | 131.8 / 100.5 | 109 | intergenic (+199/‑347) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,945 | 0 | C | A | 37.8% | 174.5 / 97.5 | 111 | intergenic (+183/‑363) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,950 | 0 | C | T | 37.3% | 144.1 / 99.9 | 110 | intergenic (+188/‑358) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,951 | 0 | A | G | 37.3% | 141.2 / 107.5 | 110 | intergenic (+189/‑357) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 195,634 | 0 | C | T | 36.2% | 97.9 / 99.4 | 105 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,879 | 0 | G | A | 35.0% | 20.7 / 12.1 | 20 | V795V (GTG→GTA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 5,988,967 | 0 | A | . | 34.3% | 225.1 / 126.7 | 102 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| Marginal new junction evidence (lowest skew 10 of 954 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5537105 | 87 (1.500) | 15 (0.330) | 13/208 | 3.1 | 17.0% | intergenic (+34/+69) | nadE/PP_4870 | NH(3)‑dependent NAD(+) synthetase/azurin |
| ? | NC_002947 | = 5537127 | 78 (1.700) | intergenic (+56/+47) | nadE/PP_4870 | NH(3)‑dependent NAD(+) synthetase/azurin | |||||
| * | ? | NC_002947 | 2429928 = | 101 (1.740) | 16 (0.370) | 12/196 | 3.1 | 18.2% | intergenic (+15/+98) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase |
| ? | NC_002947 | 2430009 = | 68 (1.570) | intergenic (+96/+17) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase | |||||
| * | ? | NC_002947 | = 182013 | 58 (1.000) | 26 (0.460) +TTTC |
16/254 | 3.3 | 31.6% | intergenic (+2/+63) | PP_5SB/PP_0160 | 5S ribosomal RNA/ferrioxamine receptor |
| ? | NC_002947 | = 1330519 | NA (NA) | intergenic (+44/‑263) | PP_5SE/PP_1157 | 5S ribosomal RNA/acetolactate synthase | |||||
| * | ? | NC_002947 | 5333243 = | 90 (1.550) | 14 (0.270) | 13/232 | 3.6 | 15.6% | intergenic (+27/‑216) | gluQ/PP_5704 | glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein |
| ? | NC_002947 | 5333303 = | 72 (1.400) | intergenic (+87/‑156) | gluQ/PP_5704 | glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein | |||||
| * | ? | NC_002947 | 529671 = | 28 (0.480) | 26 (0.480) | 14/246 | 3.6 | 49.7% | intergenic (+4/‑116) | PP_23SC/PP_5SC | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_002947 | 1330247 = | NA (NA) | intergenic (+23/‑109) | PP_23SE/PP_5SE | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_002947 | 5222954 = | NA (NA) | 23 (0.420) +GGTGAT |
14/250 | 3.7 | 24.1% | intergenic (‑317/+62) | PP_4602/PP_4603 | AraC family transcriptional regulator/transposase |
| ? | NC_002947 | = 5454758 | 76 (1.310) | intergenic (+40/+121) | PP_4791/PP_4792 | transposase/hypothetical protein | |||||
| * | ? | NC_002947 | = 4150085 | 62 (1.070) | 15 (0.300) | 12/226 | 3.7 | 23.0% | intergenic (+40/‑357) | PP_3654/PP_3655 | leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein |
| ? | NC_002947 | = 4150116 | 47 (0.940) | intergenic (+71/‑326) | PP_3654/PP_3655 | leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein | |||||
| * | ? | NC_002947 | 4074068 = | NA (NA) | 23 (0.420) +GGTGAT |
14/250 | 3.7 | 24.1% | intergenic (‑562/+62) | mdtA/PP_3586 | multidrug transporter membrane fusion protein/transposase |
| ? | NC_002947 | = 5454758 | 76 (1.310) | intergenic (+40/+121) | PP_4791/PP_4792 | transposase/hypothetical protein | |||||
| * | ? | NC_002947 | 4074068 = | NA (NA) | 21 (0.380) | 14/250 | 3.7 | NA | intergenic (‑562/+62) | mdtA/PP_3586 | multidrug transporter membrane fusion protein/transposase |
| ? | NC_002947 | 5222970 = | NA (NA) | intergenic (‑333/+46) | PP_4602/PP_4603 | AraC family transcriptional regulator/transposase | |||||
| * | ? | NC_002947 | = 2577167 | 67 (1.150) | 15 (0.280) | 13/240 | 3.7 | 19.6% | coding (1271/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | = 2577215 | 62 (1.170) | coding (1223/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator | |||||