mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 92 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,741,273 | 1 | . | C | 70.0% | 41.7 / 18.2 | 20 | intergenic (+464/+288) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,301 | 0 | A | C | 59.1% | 2.8 / 19.5 | 22 | intergenic (+492/+260) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,305 | 0 | A | C | 59.1% | 31.5 / 32.3 | 22 | intergenic (+496/+256) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 2,282,813 | 0 | T | G | 58.7% | 13.4 / 46.0 | 46 | intergenic (‑162/+67) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| * | NC_002947 | 2,282,817 | 0 | G | C | 57.5% | ‑5.4 / 52.1 | 40 | intergenic (‑166/+63) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| * | NC_002947 | 2,282,818 | 0 | G | C | 57.5% | ‑4.2 / 50.5 | 40 | intergenic (‑167/+62) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| * | NC_002947 | 4,741,299 | 0 | C | T | 57.1% | 3.1 / 20.7 | 22 | intergenic (+490/+262) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,304 | 0 | C | G | 57.1% | ‑4.3 / 26.2 | 22 | intergenic (+495/+257) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 2,282,822 | 0 | C | A | 55.6% | 2.6 / 56.1 | 45 | intergenic (‑171/+58) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| * | NC_002947 | 1,327,127 | 0 | C | T | 54.4% | 1.4 / 98.7 | 79 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 4,348,749 | 0 | A | G | 48.4% | 7.5 / 78.1 | 63 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 699,725 | 0 | A | G | 43.5% | 14.9 / 50.8 | 46 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 195,634 | 0 | C | T | 43.1% | 40.5 / 77.5 | 72 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,741,302 | 0 | A | G | 40.9% | 2.2 / 20.5 | 22 | intergenic (+493/+259) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 195,559 | 0 | C | A | 40.5% | 36.7 / 35.2 | 37 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,741,298 | 1 | . | T | 36.4% | 11.3 / 33.9 | 22 | intergenic (+489/+263) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 5,655,682 | 0 | T | G | 34.5% | 16.8 / 24.2 | 29 | intergenic (‑86/+66) | epd/tktA | D‑erythrose 4‑phosphate dehydrogenase/transketolase A |
| * | NC_002947 | 358,093 | 0 | T | C | 33.3% | 19.5 / 10.8 | 18 | intergenic (+58/‑72) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
| * | NC_002947 | 358,094 | 0 | G | A | 33.3% | 18.0 / 11.3 | 18 | intergenic (+59/‑71) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
| * | NC_002947 | 5,655,692 | 0 | T | . | 33.3% | 45.2 / 28.7 | 27 | intergenic (‑96/+56) | epd/tktA | D‑erythrose 4‑phosphate dehydrogenase/transketolase A |
| Marginal new junction evidence (lowest skew 10 of 210 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 295713 | 54 (1.430) | 10 (0.300) | 9/242 | 2.7 | 16.0% | intergenic (+60/+82) | PP_0241/PP_0242 | transporter/TetR family transcriptional regulator |
| ? | NC_002947 | = 295744 | 57 (1.680) | intergenic (+91/+51) | PP_0241/PP_0242 | transporter/TetR family transcriptional regulator | |||||
| * | ? | NC_002947 | = 1570468 | 31 (0.820) | 7 (0.230) | 7/218 | 2.9 | 19.2% | intergenic (+34/‑154) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease |
| ? | NC_002947 | = 1570494 | 34 (1.120) | intergenic (+60/‑128) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease | |||||
| * | ? | NC_002947 | 401796 = | 49 (1.300) | 8 (0.240) +ATGCACCGCGTCGCTTGT |
8/234 | 2.9 | 18.2% | intergenic (+320/+109) | PP_0334/PP_0335 | transposase/glutathione S‑transferase family protein |
| ? | NC_002947 | = 6060511 | 34 (0.900) | intergenic (+91/+90) | PP_5311/PP_5312 | signal transduction protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 90357 | 69 (1.830) | 8 (0.230) | 8/246 | 3.1 | 11.9% | intergenic (+32/+90) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 90414 | 56 (1.630) | intergenic (+89/+33) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein | |||||
| * | ? | NC_002947 | 5594143 = | 37 (0.980) | 7 (0.230) | 6/214 | 3.2 | 20.5% | intergenic (‑39/+106) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase |
| ? | NC_002947 | 5594236 = | 25 (0.840) | intergenic (‑132/+13) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase | |||||
| * | ? | NC_002947 | 5537079 = | 50 (1.320) | 6 (0.200) | 6/216 | 3.2 | 13.1% | intergenic (+8/+95) | nadE/PP_4870 | NH(3)‑dependent NAD(+) synthetase/azurin |
| ? | NC_002947 | 5537155 = | 40 (1.330) | intergenic (+84/+19) | nadE/PP_4870 | NH(3)‑dependent NAD(+) synthetase/azurin | |||||
| * | ? | NC_002947 | = 528049 | 5 (0.130) | 9 (0.250) | 8/256 | 3.2 | 65.5% | noncoding (1284/2902 nt) | PP_23SC | 23S ribosomal RNA |
| ? | NC_002947 | = 701118 | NA (NA) | noncoding (1265/2902 nt) | PP_23SD | 23S ribosomal RNA | |||||
| * | ? | NC_002947 | = 174474 | NA (NA) | 9 (0.250) | 8/256 | 3.2 | NA | noncoding (1272/2902 nt) | PP_23SA | 23S ribosomal RNA |
| ? | NC_002947 | = 174479 | NA (NA) | noncoding (1277/2902 nt) | PP_23SA | 23S ribosomal RNA | |||||
| * | ? | NC_002947 | = 6077900 | 35 (0.930) | 6 (0.190) | 6/222 | 3.3 | 14.7% | intergenic (‑146/+92) | PP_5329/PP_5330 | phosphate ABC transporter substrate‑binding protein/MFS transporter |
| ? | NC_002947 | = 6077952 | 41 (1.320) | intergenic (‑198/+40) | PP_5329/PP_5330 | phosphate ABC transporter substrate‑binding protein/MFS transporter | |||||
| * | ? | NC_002947 | 5877040 = | 50 (1.320) | 6 (0.190) | 6/222 | 3.3 | 13.2% | intergenic (+6/+99) | rpiA/PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein |
| ? | NC_002947 | 5877122 = | 38 (1.220) | intergenic (+88/+17) | rpiA/PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein | |||||