mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 60 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,741,283 | 0 | C | G | 71.0% | 42.9 / 19.3 | 31 | intergenic (+474/+278) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,285 | 0 | A | C | 71.0% | 49.7 / 12.5 | 31 | intergenic (+476/+276) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,286 | 0 | C | T | 71.0% | 38.6 / 18.6 | 31 | intergenic (+477/+275) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,280 | 0 | C | T | 67.7% | 31.7 / 20.6 | 31 | intergenic (+471/+281) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,277 | 0 | C | T | 63.3% | 23.5 / 23.1 | 31 | intergenic (+468/+284) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,273 | 1 | . | C | 58.1% | 54.4 / 43.3 | 31 | intergenic (+464/+288) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,275 | 0 | A | G | 58.1% | 15.1 / 26.4 | 31 | intergenic (+466/+286) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,302 | 0 | A | G | 54.5% | 5.7 / 35.9 | 34 | intergenic (+493/+259) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,305 | 0 | A | . | 52.9% | 45.1 / 71.9 | 34 | intergenic (+496/+256) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 1,327,127 | 0 | C | T | 52.0% | 17.2 / 125.5 | 98 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 4,741,298 | 1 | . | T | 51.5% | 55.2 / 58.4 | 33 | intergenic (+489/+263) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,299 | 0 | C | T | 47.1% | 6.7 / 36.2 | 34 | intergenic (+490/+262) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,301 | 0 | A | C | 47.1% | ‑2.3 / 43.7 | 34 | intergenic (+492/+260) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,304 | 0 | C | G | 47.1% | 10.2 / 39.9 | 34 | intergenic (+495/+257) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 699,725 | 0 | A | G | 44.1% | 14.7 / 77.3 | 69 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 4,741,274 | 0 | A | C | 41.9% | 13.8 / 25.4 | 31 | intergenic (+465/+287) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,348,749 | 0 | A | G | 41.3% | 47.3 / 99.0 | 92 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 195,634 | 0 | C | T | 40.2% | 66.9 / 86.4 | 94 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,741,276 | 0 | C | G | 35.5% | 30.4 / 23.5 | 31 | intergenic (+467/+285) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,279 | 0 | C | T | 32.3% | 33.9 / 17.1 | 31 | intergenic (+470/+282) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| Marginal new junction evidence (lowest skew 10 of 169 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5914213 = | 38 (0.660) | 11 (0.240) | 10/234 | 4.4 | 23.0% | intergenic (+49/+104) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| ? | NC_002947 | 5914309 = | 43 (0.920) | intergenic (+145/+8) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase | |||||
| * | ? | NC_002947 | = 4647641 | 21 (0.360) | 8 (0.190) | 7/212 | 5.0 | 38.7% | intergenic (+48/+83) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947 | = 4647671 | 10 (0.240) | intergenic (+78/+53) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
| * | ? | NC_002947 | = 4586100 | 21 (0.360) | 9 (0.210) | 7/214 | 5.1 | 37.9% | intergenic (+139/+78) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | = 4586128 | 14 (0.330) | intergenic (+167/+50) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947 | = 4852498 | 22 (0.380) | 7 (0.170) | 6/208 | 5.4 | 28.7% | intergenic (‑124/+173) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator |
| ? | NC_002947 | = 4852557 | 19 (0.460) | intergenic (‑183/+114) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator | |||||
| * | ? | NC_002947 | = 1970782 | 50 (0.860) | 8 (0.160) | 8/250 | 5.5 | 15.2% | intergenic (+33/‑233) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region |
| ? | NC_002947 | = 1970844 | 46 (0.920) | intergenic (+95/‑171) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region | |||||
| * | ? | NC_002947 | = 2050638 | 36 (0.620) | 8 (0.190) | 6/216 | 5.6 | 20.6% | intergenic (‑88/+87) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein |
| ? | NC_002947 | = 2050674 | 35 (0.810) | intergenic (‑124/+51) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 4476053 | 35 (0.600) | 10 (0.180) | 9/276 | 5.7 | 23.1% | coding (243/321 nt) | PP_3966 | transposase |
| ? | NC_002947 | = 4476057 | NA (NA) | coding (239/321 nt) | PP_3966 | transposase | |||||
| * | ? | NC_002947 | 3969641 = | NA (NA) | 10 (0.180) | 9/276 | 5.7 | NA | coding (232/321 nt) | PP_3499 | transposase |
| ? | NC_002947 | 3969659 = | NA (NA) | coding (250/321 nt) | PP_3499 | transposase | |||||
| * | ? | NC_002947 | = 5743404 | 53 (0.920) | 10 (0.190) | 8/264 | 5.8 | 16.1% | intergenic (‑181/+66) | fbp/glgP | class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase |
| ? | NC_002947 | = 5743432 | 56 (1.060) | intergenic (‑209/+38) | fbp/glgP | class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase | |||||
| * | ? | NC_002947 | 2472145 = | 37 (0.640) | 5 (0.120) | 5/212 | 6.0 | 19.6% | intergenic (+6/+143) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947 | 2472269 = | 14 (0.330) | intergenic (+130/+19) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase | |||||