breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 278,744 +A intergenic (‑239/+75) PP_0224 ← / ← sctC DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA 307,866 +C intergenic (+881/‑988) hslO → / → PP_0254 molecular chaperone HslO/hypothetical protein
RA 336,125 +T coding (210/237 nt) PP_0278 → hypothetical protein
RA 353,067 A→G intergenic (+34/+84) hisF → / ← cbcV imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA 499,203 A→G intergenic (+47/‑249) uhpA → / → PP_0411 two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA 1,070,248 +GA intergenic (+48/+94) aroP‑I → / ← PP_0928 aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA 1,126,647 +C intergenic (‑101/+48) tdcG‑II ← / ← gcvP‑I L‑serine dehydratase/glycine dehydrogenase
RA 1,419,549 +C intergenic (‑38/+98) PP_1242 ← / ← PP_1244 hypothetical protein/hypothetical protein
RA 1,499,480 2 bp→AC intergenic (+57/‑106) trpS → / → zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA 1,499,508 +C intergenic (+85/‑79) trpS → / → zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA 1,932,640 +C intergenic (‑107/+43) rluA ← / ← minE bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA 2,328,228 T→C E34G (GAG→GGG)  PP_2046 ← LysR family transcriptional regulator
RA 2,958,523 C→T A428V (GCA→GTA)  PP_2589 → aldehyde dehydrogenase family protein
RA 3,845,705 +G intergenic (‑72/+26) PP_3394 ← / ← PP_3395 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA 3,951,159 T→C intergenic (‑123/+72) PP_3486 ← / ← PP_3487 cytochrome c/hypothetical protein
RA 3,951,161 A→T intergenic (‑125/+70) PP_3486 ← / ← PP_3487 cytochrome c/hypothetical protein
RA 4,586,030 2 bp→TC intergenic (+113/+101) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,586,035 +G intergenic (+118/+97) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,586,057 +C intergenic (+140/+75) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,740,811 (T)7→6 intergenic (+48/+705) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,816 T→G intergenic (+53/+700) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,819 2 bp→CT intergenic (+56/+696) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,255 C→T intergenic (+492/+261) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,257 A→C intergenic (+494/+259) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,260 2 bp→GC intergenic (+497/+255) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,263 A→C intergenic (+500/+253) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,272 A→G intergenic (+509/+244) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,274 A→C intergenic (+511/+242) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,276 G→C intergenic (+513/+240) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,278 C→T intergenic (+515/+238) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,283 +T intergenic (+520/+233) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,289 C→G intergenic (+526/+227) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,292 C→T intergenic (+529/+224) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,294 C→G intergenic (+531/+222) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,296 A→C intergenic (+533/+220) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,298 C→T intergenic (+535/+218) gltA → / ← yeiW citrate synthase/putative oxidoreductase
JC 4,980,585 +GGC intergenic (‑24/+44) PP_4387 ← / ← flgE hypothetical protein/flagellar hook protein FlgE
JC 5,555,608 +GCC intergenic (‑84/+87) PP_4887 ← / ← PP_4888 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 5,674,751 +G intergenic (+113/+27) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA 5,674,753 G→C intergenic (+115/+25) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
JC 5,681,415 +CGGG intergenic (‑133/+71) PP_4986 ← / ← PP_4987 hemolysin III family channel protein/putative Chemotaxis protein
RA 5,740,555 C→T S175N (AGC→AAC)  PP_5037 ← lipocalin family lipoprotein
RA 6,013,885 T→C intergenic (+90/+20) xpt → / ← PP_5266 xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 171344–172965 176330–175373 2409–4987 49 [48] [47] 49 PP_16SA–[PP_5SA] PP_16SA,PP_23SA,[PP_5SA]
* * ÷ NC_002947 176621–178395 181732–180803 2409–5112 49 [47] [48] 51 PP_16SB–[PP_r01] PP_16SB,PP_23SB,[PP_r01]
* * ÷ NC_002947 207518–208149 208930–208223 75–1413 49 [48] [48] 49 PP_0168 putative surface adhesion protein
* * ÷ NC_002947 215441–216084 216867–216158 75–1427 49 [48] [48] 50 PP_0168 putative surface adhesion protein
* * ÷ NC_002947 528014–528670 529633–528933 264–1620 50 [48] [45] 49 PP_23SC 23S ribosomal RNA
* * ÷ NC_002947 699760–701758 702688–702021 264–2929 49 [47] [48] 51 [PP_23SD] [PP_23SD]
* * ÷ NC_002947 741546–742142 743308–742539 398–1763 52 [44] [47] 49 [PP_0635] [PP_0635]
* * ÷ NC_002947 745006–745902 746889–745957 56–1884 49 [48] [46] 49 [PP_0637]–PP_0638 [PP_0637],PP_0638
* * ÷ NC_002947 1296558–1297215 1298484–1297506 292–1927 51 [48] [48] 49 PP_1133 PP_1133
* * ÷ NC_002947 1327171–1328840 1330461–1329487 648–3291 51 [48] [48] 50 PP_23SE–[PP_5SE] PP_23SE,[PP_5SE]
* * ÷ NC_002947 1440070–1440730 1441990–1441021 292–1921 49 [45] [48] 50 PP_1260 PP_1260
* * ÷ NC_002947 2085819–2087117 2087117 1–1299 49 [47] [47] 50 [PP_1865] [PP_1865]
* * ÷ NC_002947 2256596–2258168 2258168 1–1573 49 [48] [48] 49 PP_1990 PP_1990
* * ÷ NC_002947 2413047–2414402 2414402 1–1356 50 [48] [48] 49 [PP_2114] [PP_2114]
* * ÷ NC_002947 2529175–2530837 2530837 1–1663 49 [48] [48] 50 PP_2218–[PP_2219] PP_2218,[PP_2219]
* * ÷ NC_002947 2551393–2552240 2553851–2552887 648–2459 51 [48] [48] 49 [PP_23SF]–[PP_5SF] [PP_23SF],[PP_5SF]
* * ÷ NC_002947 2869333–2870648 2870648 1–1316 49 [48] [48] 49 [PP_2522] [PP_2522]
* * ÷ NC_002947 2937729–2938361 2939325–2938652 292–1597 49 [48] [48] 49 [PP_2570] [PP_2570]
* * ÷ NC_002947 3522903–3523448 3525132–3524487 1040–2230 49 [47] [47] 49 PP_3113–[PP_3115] PP_3113,PP_3114,[PP_3115]
* * ÷ NC_002947 3826309–3827283 3828247–3827574 292–1939 49 [46] [47] 49 PP_3381 PP_3381
* * ÷ NC_002947 3969354–3970058 3971581–3970889 832–2228 50 [47] [47] 49 PP_3499–[PP_3501] PP_3499,PP_3500,[PP_3501]
* * ÷ NC_002947 4073735–4074721 4075692–4075012 292–1958 49 [45] [48] 51 PP_3586 PP_3586
* * ÷ NC_002947 4391580–4392375 4393387–4392772 398–1808 49 [48] [48] 49 PP_3868 PP_3868
* * ÷ NC_002947 4486370–4487088 4488613–4487919 832–2244 50 [48] [48] 49 PP_3979–[PP_3981] PP_3979,PP_3980,[PP_3981]
* * ÷ NC_002947 4493390–4494041 4495670–4495080 1040–2281 49 [48] [48] 49 [PP_3984]–PP_3986 [PP_3984],PP_3985,PP_3986
* * ÷ NC_002947 4536284–4537207 4538172–4537262 56–1889 49 [47] [48] 49 PP_4024–[PP_4025] PP_4024,[PP_4025]
* * ÷ NC_002947 4908265–4909559 4909559 1–1295 49 [47] [47] 50 [PP_4318] [PP_4318]
* * ÷ NC_002947 5033211–5033937 5035442–5034768 832–2232 49 [48] [47] 50 PP_4437–[PP_4439] PP_4437,PP_4438,[PP_4439]
* * ÷ NC_002947 5036170–5036770 5038402–5037754 985–2233 51 [48] [48] 49 PP_4441–[PP_4443] PP_4441,PP_4442,[PP_4443]
* * ÷ NC_002947 5222619–5223603 5224569–5223894 292–1951 49 [48] [47] 49 PP_4603 PP_4603
* * ÷ NC_002947 5307650–5308419 5310690–5309066 648–3041 50 [48] [48] 50 PP_23SG PP_23SG
* * ÷ NC_002947 5401812–5402728 5403728–5402783 56–1917 50 [47] [48] 49 [PP_4745]–PP_4746 [PP_4745],PP_4746
* * ÷ NC_002947 5453080–5453744 5454640–5454035 292–1561 49 [47] [47] 49 [PP_4791] [PP_4791]
* * ÷ NC_002947 6152975–6153629 6155204–6154613 985–2230 50 [46] [48] 49 [PP_5396]–PP_5398 [PP_5396],PP_5397,PP_5398