mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,438,466 | 0 | G | C | 61.5% | ‑4.4 / 10.9 | 13 | intergenic (‑29/‑89) | PP_5648/PP_3928 | hypothetical protein/hypothetical protein |
| * | NC_002947 | 5,140,018 | 0 | C | A | 52.9% | 7.0 / 16.1 | 18 | E517* (GAA→TAA) | PP_4521 | aerotaxis receptor |
| * | NC_002947 | 4,353,698 | 0 | A | G | 50.0% | ‑0.6 / 18.0 | 14 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 4,813,153 | 0 | G | T | 45.2% | 23.8 / 35.5 | 31 | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | NC_002947 | 5,993,808 | 0 | G | T | 35.7% | 15.0 / 10.6 | 14 | intergenic (+97/‑449) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 2,092,230 | 0 | A | . | 33.3% | 41.4 / 23.1 | 22 | intergenic (+51/+867) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 1,332,076 | 0 | C | T | 30.4% | 28.5 / 14.5 | 23 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 5,993,916 | 0 | A | C | 26.3% | 26.6 / 13.7 | 19 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 1,148,023 | 0 | G | C | 26.1% | 32.2 / 14.3 | 24 | P68P (CCG→CCC) | arcD‑II | arginine/ornithine antiporter |
| * | NC_002947 | 2,092,443 | 0 | G | A | 25.0% | 41.6 / 10.1 | 24 | intergenic (+264/+654) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 2,092,627 | 0 | T | C | 24.3% | 58.1 / 20.1 | 37 | intergenic (+448/+470) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 2,092,445 | 0 | T | G | 23.1% | 47.4 / 17.3 | 26 | intergenic (+266/+652) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 2,092,447 | 0 | A | C | 22.2% | 52.1 / 13.1 | 27 | intergenic (+268/+650) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |