mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 22 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,332,076 | 0 | C | T | 74.1% | 15.5 / 15.0 | 27 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 5,986,411 | 0 | T | A | 61.1% | 1.2 / 10.8 | 19 | L684Q (CTG→CAG) | PP_5242 | GAF domain‑containing sensor histidine kinase |
| * | NC_002947 | 923,649 | 0 | T | G | 58.8% | ‑1.1 / 12.3 | 18 | Q516P (CAG→CCG) | PP_0804 | protein secretion ABC transporter permease/ATP‑binding protein |
| * | NC_002947 | 195,634 | 0 | C | T | 58.3% | ‑3.8 / 10.2 | 12 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 5,993,814 | 0 | G | A | 58.1% | 10.7 / 34.7 | 31 | intergenic (+103/‑443) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 923,656 | 0 | C | A | 55.6% | 16.1 / 25.8 | 20 | D514Y (GAT→TAT) | PP_0804 | protein secretion ABC transporter permease/ATP‑binding protein |
| * | NC_002947 | 3,638,041 | 0 | T | G | 53.8% | 1.3 / 17.2 | 26 | V174G (GTG→GGG) | PP_3201 | BNR domain‑containing protein |
| * | NC_002947 | 3,749,651 | 0 | A | T | 53.8% | 1.5 / 10.2 | 13 | I315F (ATT→TTT) | paoB | aromatic aldehyde dehydrogenase FAD‑binding subunit |
| * | NC_002947 | 1,153,749 | 0 | T | G | 52.9% | ‑4.2 / 10.3 | 17 | T151P (ACG→CCG) | PP_1007 | transmembrane sensor |
| * | NC_002947 | 5,993,916 | 0 | A | C | 50.0% | ‑4.1 / 33.1 | 24 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 699,725 | 0 | A | G | 46.7% | 2.0 / 15.6 | 15 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 4,353,698 | 0 | A | G | 41.4% | 21.2 / 32.7 | 29 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 2,092,445 | 0 | T | G | 40.9% | 4.1 / 30.3 | 22 | intergenic (+266/+652) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 196,351 | 0 | C | G | 40.0% | 9.9 / 17.4 | 15 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 2,092,443 | 0 | G | A | 38.1% | 14.7 / 14.3 | 22 | intergenic (+264/+654) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 2,092,447 | 0 | A | C | 37.5% | 13.7 / 24.4 | 24 | intergenic (+268/+650) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 770,210 | 0 | T | G | 36.4% | 64.5 / 13.6 | 44 | F267C (TTT→TGT) | PP_0661 | transcriptional regulator AmpR |
| * | NC_002947 | 196,327 | 0 | A | C | 27.3% | 37.2 / 16.7 | 22 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 2,092,225 | 0 | G | T | 26.4% | 96.9 / 12.4 | 55 | intergenic (+46/+872) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 196,306 | 0 | T | C | 25.0% | 41.3 / 12.4 | 24 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |