mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,089,416 | 0 | G | A | 60.0% | ‑0.7 / 13.5 | 15 | intergenic (+264/+654) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 2,089,420 | 0 | A | C | 56.2% | 3.4 / 12.1 | 16 | intergenic (+268/+650) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 1,327,127 | 0 | C | T | 51.5% | 8.1 / 47.3 | 33 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 2,671,952 | 0 | G | A | 50.0% | ‑6.2 / 10.1 | 10 | G777G (GGC→GGT) | acnB | aconitate hydratase B |
| * | NC_002947 | 2,671,964 | 0 | C | G | 45.5% | ‑1.7 / 13.2 | 11 | S773S (TCG→TCC) | acnB | aconitate hydratase B |
| * | NC_002947 | 4,350,671 | 0 | A | G | 44.8% | 9.4 / 37.0 | 29 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 195,634 | 0 | C | T | 43.8% | 8.2 / 14.6 | 16 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 2,671,943 | 0 | T | C | 41.7% | ‑2.0 / 10.4 | 12 | A780A (GCA→GCG) | acnB | aconitate hydratase B |
| * | NC_002947 | 5,990,889 | 0 | A | C | 40.9% | 0.9 / 24.6 | 27 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 6,072,138 | 0 | A | C | 36.0% | 52.3 / 13.8 | 50 | V162G (GTG→GGG) | PP_5324 | two‑component system response regulator |
| * | NC_002947 | 2,671,973 | 0 | T | A | 35.7% | 3.7 / 10.4 | 14 | P770P (CCA→CCT) | acnB | aconitate hydratase B |
| * | NC_002947 | 2,671,976 | 0 | C | G | 33.3% | 18.2 / 10.8 | 15 | M769I (ATG→ATC) | acnB | aconitate hydratase B |
| * | NC_002947 | 2,672,008 | 0 | T | C | 33.3% | 9.8 / 10.1 | 15 | I759V (ATC→GTC) | acnB | aconitate hydratase B |
| * | NC_002947 | 5,990,781 | 0 | G | T | 32.0% | 42.7 / 11.5 | 25 | intergenic (+97/‑449) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 2,671,982 | 0 | C | G | 31.2% | 17.5 / 12.6 | 16 | M767I (ATG→ATC) | acnB | aconitate hydratase B |
| * | NC_002947 | 2,671,995 | 0 | G | C | 31.2% | 18.6 / 12.3 | 16 | A763G (GCC→GGC) | acnB | aconitate hydratase B |
| * | NC_002947 | 2,089,203 | 0 | A | . | 30.0% | 59.7 / 31.4 | 30 | intergenic (+51/+867) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 1,617,914 | 0 | C | G | 26.3% | 27.2 / 12.6 | 19 | intergenic (‑127/+46) | PP_1417/PP_1418 | tricarboxylate transport protein TctB/tricarboxylate transport protein TctC |
| * | NC_002947 | 4,024,616 | 0 | G | A | 21.4% | 55.7 / 10.4 | 28 | intergenic (‑345/+323) | PP_3547/emrB | NAD(P)‑binding oxidoreductase/multidrug transporter permease |