mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,207,564 | 0 | A | C | 57.1% | ‑2.9 / 13.8 | 14 | intergenic (‑32/‑583) | purH/rrsE | IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon |
| * | NC_000913 | 2,253,023 | 0 | C | G | 54.5% | 2.7 / 16.0 | 12 | A375P (GCG→CCG) | nupX | nucleoside permease |
| * | NC_000913 | 1,041,386 | 0 | G | C | 52.6% | ‑4.0 / 25.6 | 19 | G257A (GGA→GCA) | appA | phosphoanhydride phosphorylase |
| * | NC_000913 | 3,728,183 | 0 | C | G | 48.4% | 15.8 / 35.0 | 31 | A397P (GCG→CCG) | xylB | xylulokinase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 41.2% | 30.7 / 65.2 | 51 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,879,536 | 0 | C | G | 40.7% | 35.4 / 12.9 | 28 | G79G (GGG→GGC) | ygbT | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3823262 = | 37 (1.470) | 4 (0.180) | 4/118 | 1.8 | 11.3% | coding (863/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| ? | NC_000913 | 3823339 = | 30 (1.340) | coding (940/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase | |||||
| * | ? | NC_000913 | 4378798 = | 28 (1.110) | 3 (0.140) | 3/112 | 2.0 | 10.8% | coding (147/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| ? | NC_000913 | 4378916 = | 26 (1.220) | coding (29/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak | |||||
| * | ? | NC_000913 | 1304426 = | 34 (1.350) | 3 (0.140) | 3/116 | 2.1 | 9.6% | coding (593/909 nt) | oppC | oligopeptide ABC transporter permease |
| ? | NC_000913 | 1304482 = | 27 (1.220) | coding (649/909 nt) | oppC | oligopeptide ABC transporter permease | |||||