mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,984,188 | 0 | C | G | 70.6% | 11.5 / 13.7 | 17 | G294G (GGG→GGC) | araG | L‑arabinose ABC transporter ATPase |
| * | NC_000913 | 3,728,183 | 0 | C | G | 54.5% | ‑4.3 / 13.2 | 13 | A397P (GCG→CCG) | xylB | xylulokinase |
| * | NC_000913 | 1,527,602 | 0 | G | C | 32.3% | 53.4 / 14.3 | 32 | intergenic (+450/‑300) | yncH/rhsE | IPR020099 family protein/pseudogene, Rhs family |
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.4% | 50.3 / 24.6 | 35 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 34,508 | 0 | G | C | 25.6% | 94.2 / 15.2 | 39 | G70A (GGA→GCA) | caiF | cai operon transcriptional activator |
| * | NC_000913 | 792,496 | 0 | C | . | 20.0% | 55.5 / 10.5 | 20 | coding (1293/1473 nt) | modF | molybdate ABC transporter ATPase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1362001 = | 19 (0.860) | 4 (0.210) | 4/114 | 1.4 | 19.8% | coding (91/558 nt) | puuR | repressor for the divergent puu operons, putrescine inducible |
| ? | NC_000913 | 1362051 = | 16 (0.840) | coding (141/558 nt) | puuR | repressor for the divergent puu operons, putrescine inducible | |||||
| * | ? | NC_000913 | = 2197774 | 21 (0.950) | 3 (0.160) | 3/110 | 1.6 | 15.6% | pseudogene (1301/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| ? | NC_000913 | = 2197784 | 15 (0.820) | pseudogene (1311/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function | |||||
| * | ? | NC_000913 | = 1987441 | 21 (0.950) | 4 (0.210) | 3/112 | 1.7 | 19.1% | intergenic (+13/+66) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| ? | NC_000913 | = 1987450 | 16 (0.860) | intergenic (+22/+57) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein | |||||