mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,984,188 | 0 | C | G | 57.1% | ‑6.1 / 18.8 | 14 | G294G (GGG→GGC) | araG | L‑arabinose ABC transporter ATPase |
| * | NC_000913 | 1,135,975 | 0 | G | C | 55.6% | 2.0 / 27.1 | 18 | A138P (GCC→CCC) | flgH | flagellar protein of basal‑body outer‑membrane L ring |
| * | NC_000913 | 3,728,183 | 0 | C | G | 54.5% | ‑4.7 / 11.8 | 11 | A397P (GCG→CCG) | xylB | xylulokinase |
| * | NC_000913 | 2,035,587 | 0 | C | G | 52.4% | ‑0.3 / 24.3 | 21 | intergenic (+344/‑248) | yedS/hchA | pseudogene, outer membrane protein homology; putative outer membrane protein/glyoxalase III and Hsp31 molecular chaperone |
| * | NC_000913 | 1,041,386 | 0 | G | C | 44.4% | 9.4 / 12.4 | 18 | G257A (GGA→GCA) | appA | phosphoanhydride phosphorylase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 40.0% | 12.8 / 26.2 | 25 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,848,210 | 0 | C | G | 37.0% | 37.9 / 14.7 | 27 | G344G (GGG→GGC) | hycC | hydrogenase 3, membrane subunit |
| * | NC_000913 | 1,527,602 | 0 | G | C | 29.2% | 35.0 / 13.7 | 26 | intergenic (+450/‑300) | yncH/rhsE | IPR020099 family protein/pseudogene, Rhs family |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3579387 | 27 (1.220) | 4 (0.210) | 4/112 | 1.5 | 15.1% | coding (259/696 nt) | yhhW | quercetinase activity in vitro |
| ? | NC_000913 | = 3579470 | 22 (1.180) | coding (176/696 nt) | yhhW | quercetinase activity in vitro | |||||
| * | ? | NC_000913 | 395867 = | 25 (1.130) | 4 (0.200) | 4/118 | 1.6 | 14.5% | coding (421/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase |
| ? | NC_000913 | 395897 = | 25 (1.270) | coding (391/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase | |||||
| * | ? | NC_000913 | = 3588435 | 16 (0.720) | 3 (0.170) | 3/108 | 1.7 | 18.2% | coding (746/1071 nt) | ugpC | sn‑glycerol‑3‑phosphate ABC transporter ATPase |
| ? | NC_000913 | = 3589209 | 14 (0.780) | coding (819/846 nt) | ugpE | sn‑glycerol‑3‑phosphate ABC transporter permease | |||||
| * | ? | NC_000913 | 2548123 = | 26 (1.180) | 3 (0.160) | 3/114 | 1.8 | 12.4% | coding (22/1305 nt) | yfeW | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity |
| ? | NC_000913 | 2548199 = | 20 (1.050) | coding (98/1305 nt) | yfeW | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity | |||||
| * | ? | NC_000913 | 2467683 = | 27 (1.220) | 3 (0.160) | 3/114 | 1.8 | 12.2% | coding (1139/1158 nt) | intS | CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase |
| ? | NC_000913 | 2467783 = | 20 (1.050) | intergenic (+81/‑72) | intS/gtrA | CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase/CPS‑53 (KpLE1) prophage; bactoprenol‑linked glucose translocase/flippase | |||||
| * | ? | NC_000913 | = 2329047 | 27 (1.220) | 3 (0.160) | 3/114 | 1.8 | 13.9% | coding (751/1650 nt) | yfaQ | tandem DUF2300 domain protein, putative host defense protein |
| ? | NC_000913 | = 2329406 | 14 (0.730) | coding (392/1650 nt) | yfaQ | tandem DUF2300 domain protein, putative host defense protein | |||||
| * | ? | NC_000913 | 1362001 = | 19 (0.860) | 3 (0.160) | 3/114 | 1.8 | 14.2% | coding (91/558 nt) | puuR | repressor for the divergent puu operons, putrescine inducible |
| ? | NC_000913 | 1362051 = | 20 (1.050) | coding (141/558 nt) | puuR | repressor for the divergent puu operons, putrescine inducible | |||||
| * | ? | NC_000913 | 1213583 = | 23 (1.040) | 4 (0.210) | 3/112 | 1.8 | 19.3% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | NC_000913 | 1213633 = | 14 (0.750) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
| * | ? | NC_000913 | 704375 = | 18 (0.810) | 3 (0.150) | 3/116 | 1.8 | 16.3% | coding (432/1947 nt) | nagE | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components |
| ? | NC_000913 | 704405 = | 15 (0.770) | coding (462/1947 nt) | nagE | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components | |||||
| * | ? | NC_000913 | = 4378591 | 33 (1.490) | 3 (0.150) | 3/118 | 1.9 | 9.6% | coding (354/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| ? | NC_000913 | = 4378631 | 27 (1.370) | coding (314/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak | |||||