mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,879,536 | 0 | C | G | 53.8% | ‑2.5 / 12.8 | 13 | G79G (GGG→GGC) | ygbT | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
| * | NC_000913 | 1,081,353 | 0 | G | C | 50.0% | 6.0 / 12.4 | 18 | intergenic (+540/‑3) | putP/efeU | proline:sodium symporter/ferrous iron permease (pseudogene) |
| * | NC_000913 | 3,107,154 | 0 | C | G | 50.0% | ‑2.8 / 10.2 | 12 | A668P (GCG→CCG) | speC | ornithine decarboxylase, constitutive |
| * | NC_000913 | 1,984,188 | 0 | C | G | 47.4% | 9.6 / 20.4 | 20 | G294G (GGG→GGC) | araG | L‑arabinose ABC transporter ATPase |
| * | NC_000913 | 1,041,386 | 0 | G | C | 45.5% | 15.8 / 17.2 | 22 | G257A (GGA→GCA) | appA | phosphoanhydride phosphorylase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 43.3% | 7.8 / 37.4 | 31 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,135,975 | 0 | G | C | 41.2% | 7.9 / 10.9 | 18 | A138P (GCC→CCC) | flgH | flagellar protein of basal‑body outer‑membrane L ring |
| * | NC_000913 | 3,528,622 | 0 | T | G | 25.0% | 26.3 / 11.1 | 24 | intergenic (+18/‑47) | yrfF/yrfG | putative RcsCDB‑response attenuator, inner membrane protein/GMP/IMP nucleotidase |
| Marginal new junction evidence (lowest skew 10 of 39 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3817664 = | 21 (1.050) | 5 (0.280) | 4/118 | 1.5 | 15.9% | intergenic (+125/‑96) | yicC/dinD | UPF0701 family protein/DNA damage‑inducible protein |
| ? | NC_000913 | 3817761 = | 34 (1.910) | coding (2/825 nt) | dinD | DNA damage‑inducible protein | |||||
| * | ? | NC_000913 | 1701402 = | 24 (1.200) | 3 (0.180) | 3/108 | 1.6 | 17.9% | coding (446/1173 nt) | malY | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| ? | NC_000913 | 1701793 = | 8 (0.490) | coding (837/1173 nt) | malY | PLP‑dependent beta‑cystathionase and maltose regulon regulator | |||||
| * | ? | NC_000913 | 670713 = | 18 (0.900) | 3 (0.180) | 3/110 | 1.6 | 19.4% | coding (893/1032 nt) | holA | DNA polymerase III, delta subunit |
| ? | NC_000913 | 670903 = | 10 (0.600) | coding (703/1032 nt) | holA | DNA polymerase III, delta subunit | |||||
| * | ? | NC_000913 | = 4481898 | 24 (1.200) | 3 (0.170) | 3/116 | 1.7 | 12.8% | coding (1940/2856 nt) | valS | valyl‑tRNA synthetase |
| ? | NC_000913 | = 4481970 | 20 (1.140) | coding (1868/2856 nt) | valS | valyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 4153432 | NA (NA) | 3 (0.170) | 3/116 | 1.7 | 11.6% | noncoding (86/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 4153483 | 26 (1.300) | noncoding (137/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | = 3674139 | 17 (0.850) | 3 (0.180) | 3/112 | 1.7 | 17.0% | coding (778/1014 nt) | yhjD | inner membrane putative BrbK family alternate lipid exporter |
| ? | NC_000913 | = 3674303 | 15 (0.890) | coding (942/1014 nt) | yhjD | inner membrane putative BrbK family alternate lipid exporter | |||||
| * | ? | NC_000913 | 3544643 = | 21 (1.050) | 3 (0.170) | 3/114 | 1.7 | 17.1% | coding (202/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase |
| ? | NC_000913 | 3544702 = | 11 (0.640) | coding (143/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase | |||||
| * | ? | NC_000913 | = 3355606 | 21 (1.050) | 3 (0.170) | 3/116 | 1.7 | 14.1% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | NC_000913 | = 3355642 | 18 (1.030) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | NC_000913 | = 3209170 | 20 (1.000) | 3 (0.170) | 3/116 | 1.7 | 13.2% | coding (1147/1464 nt) | ttdT | L‑tartrate/succinate antiporte |
| ? | NC_000913 | = 3209341 | 22 (1.260) | coding (1318/1464 nt) | ttdT | L‑tartrate/succinate antiporte | |||||
| * | ? | NC_000913 | 2353082 = | 19 (0.950) | 3 (0.170) | 3/116 | 1.7 | 14.1% | coding (436/1629 nt) | glpA | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, large FAD/NAD(P)‑binding subunit |
| ? | NC_000913 | 2353145 = | 20 (1.140) | coding (499/1629 nt) | glpA | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, large FAD/NAD(P)‑binding subunit | |||||