mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 44 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 667004 = | 224 (3.750) | 8 (0.140) | 7/270 | 6.6 | 3.7% | coding (58/1032 nt) | holA | DNA polymerase III, delta subunit |
| ? | CP009273 | 667036 = | 206 (3.730) | coding (26/1032 nt) | holA | DNA polymerase III, delta subunit | |||||
| * | ? | CP009273 | 4285763 = | NA (NA) | 10 (0.180) | 6/278 | 7.3 | NA | noncoding (41/530 nt) | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | 4285796 = | NA (NA) | noncoding (74/530 nt) | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | CP009273 | 2223931 = | 53 (0.890) | 6 (0.110) | 5/270 | 7.7 | 10.9% | intergenic (‑67/‑172) | dusC/yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| ? | CP009273 | 2223961 = | 49 (0.890) | intergenic (‑97/‑142) | dusC/yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein | |||||
| * | ? | CP009273 | = 638966 | 293 (4.900) | 5 (0.090) | 5/274 | 7.8 | 1.8% | intergenic (+184/+47) | ybdR/rnk | putative Zn‑dependent NAD(P)‑binding oxidoreductase/regulator of nucleoside diphosphate kinase |
| ? | CP009273 | = 638970 | 282 (5.030) | intergenic (+188/+43) | ybdR/rnk | putative Zn‑dependent NAD(P)‑binding oxidoreductase/regulator of nucleoside diphosphate kinase | |||||
| * | ? | CP009273 | 270331 = | NA (NA) | 7 (0.120) | 5/274 | 7.8 | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270374 = | NA (NA) | noncoding (169/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | 622210 = | 249 (4.160) | 5 (0.090) | 5/278 | 7.9 | 2.0% | coding (685/1611 nt) | entE | 2,3‑dihydroxybenzoate‑AMP ligase component of enterobactin synthase multienzyme complex |
| ? | CP009273 | 622256 = | 248 (4.360) | coding (731/1611 nt) | entE | 2,3‑dihydroxybenzoate‑AMP ligase component of enterobactin synthase multienzyme complex | |||||
| * | ? | CP009273 | 4028531 = | NA (NA) | 8 (0.160) +25 bp |
3/242 | 8.3 | 12.8% | intergenic (+18/‑360) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| ? | CP009273 | 4156155 = | 66 (1.100) | coding (800/858 nt) | murI | glutamate racemase | |||||
| * | ? | CP009273 | 4532499 = | 57 (0.950) | 4 (0.070) | 4/274 | 8.4 | 7.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 46 (0.820) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 222382 | NA (NA) | 15 (0.260) | 4/278 | 8.5 | NA | noncoding (137/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 222386 | NA (NA) | noncoding (141/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 3780234 = | 63 (1.050) | 4 (0.070) | 4/284 | 8.6 | 5.7% | coding (37/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor |
| ? | CP009273 | 3780286 = | 72 (1.240) | coding (89/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor | |||||