mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 25.4% | 73.1 / 28.9 | 55 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 20.4% | 81.3 / 21.9 | 55 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 94 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2765420 = | 198 (0.820) | 6 (0.030) | 6/416 | 17.0 | 3.5% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 163 (0.820) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 4037216 = | 122 (0.510) | 6 (0.030) | 6/486 | 18.7 | 4.8% | noncoding (76/77 nt) | ileT | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 122 (0.520) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | 1070548 = | 227 (0.940) | 6 (0.030) | 6/490 | 18.8 | 2.7% | coding (408/591 nt) | rutE | putative malonic semialdehyde reductase |
| ? | NC_000913 | 1070576 = | 205 (0.870) | coding (380/591 nt) | rutE | putative malonic semialdehyde reductase | |||||
| * | ? | NC_000913 | 742053 = | 250 (1.040) | 6 (0.030) | 6/490 | 18.8 | 2.4% | coding (504/1482 nt) | dtpD | dipeptide and tripeptide permease D |
| ? | NC_000913 | 742078 = | 235 (1.000) | coding (479/1482 nt) | dtpD | dipeptide and tripeptide permease D | |||||
| * | ? | NC_000913 | = 3427077 | 28 (0.120) | 6 (0.030) | 5/486 | 19.4 | 7.5% | noncoding (76/77 nt) | ileU | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 122 (0.520) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3427065 | 32 (0.130) | 5 (0.020) | 5/486 | 19.4 | 6.3% | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913 | 4037225 = | 118 (0.510) | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | 225468 = | 71 (0.290) | 5 (0.020) | 5/486 | 19.4 | 5.1% | intergenic (+11/‑32) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913 | 4037225 = | 118 (0.510) | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | 225456 = | 66 (0.270) | 6 (0.030) | 5/486 | 19.4 | 6.1% | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 122 (0.520) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 5 (0.020) | 3/426 | 19.6 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 3288017 = | 236 (0.980) | 4 (0.020) | 4/474 | 19.9 | 1.7% | intergenic (+7/‑73) | yraH/yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| ? | NC_000913 | 3288049 = | 229 (1.010) | intergenic (+39/‑41) | yraH/yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone | |||||