mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 33.3% | 90.5 / 49.4 | 80 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 315401 = | NA (NA) | 8 (0.090) | 8/448 | 6.9 | NA | noncoding (173/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315627 = | NA (NA) | noncoding (399/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 2522127 | 109 (1.100) | 6 (0.060) | 5/460 | 8.4 | 5.7% | coding (351/885 nt) | xapR | transcriptional activator of xapAB |
| ? | NC_000913 | = 2522254 | 92 (0.950) | coding (224/885 nt) | xapR | transcriptional activator of xapAB | |||||
| * | ? | NC_000913 | = 2678495 | 75 (0.760) | 5 (0.050) | 5/462 | 8.5 | 6.2% | coding (873/984 nt) | yphF | putative sugar ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 2679123 | 78 (0.810) | coding (245/984 nt) | yphF | putative sugar ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 14 (0.170) | 3/396 | 8.8 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 4542690 | 28 (0.280) | 4 (0.040) | 4/456 | 8.9 | 9.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 51 (0.530) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1102930 | 124 (1.250) | 8 (0.080) | 4/456 | 8.9 | 6.1% | coding (267/651 nt) | csgD | csgBAC operon transcriptional regulator |
| ? | NC_000913 | = 1103037 | 129 (1.350) | coding (160/651 nt) | csgD | csgBAC operon transcriptional regulator | |||||
| * | ? | NC_000913 | 339032 = | 121 (1.220) | 4 (0.040) | 4/452 | 8.9 | 3.3% | coding (708/1419 nt) | yahG | DUF1116 family protein |
| ? | NC_000913 | 339643 = | 118 (1.250) | coding (1319/1419 nt) | yahG | DUF1116 family protein | |||||
| * | ? | NC_000913 | = 4609854 | 108 (1.090) | 4 (0.040) | 4/464 | 9.0 | 3.6% | coding (441/1590 nt) | prfC | peptide chain release factor RF‑3 |
| ? | NC_000913 | = 4610163 | 107 (1.100) | coding (750/1590 nt) | prfC | peptide chain release factor RF‑3 | |||||
| * | ? | NC_000913 | = 4141781 | 93 (0.940) | 4 (0.040) | 4/458 | 9.0 | 4.1% | coding (441/2502 nt) | frwA | putative PTS enzyme: Hpr, enzyme I and II components |
| ? | NC_000913 | = 4141967 | 97 (1.010) | coding (255/2502 nt) | frwA | putative PTS enzyme: Hpr, enzyme I and II components | |||||
| * | ? | NC_000913 | 2655876 = | 125 (1.260) | 4 (0.040) | 4/466 | 9.1 | 3.0% | coding (483/1284 nt) | pepB | aminopeptidase B |
| ? | NC_000913 | 2656032 = | 136 (1.390) | coding (327/1284 nt) | pepB | aminopeptidase B | |||||