mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4549873 | 111 (1.230) | 3 (0.030) | 3/244 | NT | 2.8% | intergenic (+163/+80) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter |
| ? | NC_000913 | = 4549888 | 106 (1.230) | intergenic (+178/+65) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter | |||||
| * | ? | NC_000913 | 4502147 = | 82 (0.910) | 4 (0.050) | 4/242 | NT | 4.9% | noncoding (1369/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | 4502181 = | 77 (0.900) | noncoding (1335/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | = 4349233 | 156 (1.730) | 5 (0.060) | 5/232 | NT | 3.5% | intergenic (‑489/+82) | dcuB/dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS |
| ? | NC_000913 | = 4349250 | 137 (1.670) | intergenic (‑506/+65) | dcuB/dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | NC_000913 | = 4124709 | 97 (1.070) | 3 (0.040) | 3/242 | NT | 3.1% | coding (2102/2199 nt) | priA | Primosome factor n' (replication factor Y) |
| ? | NC_000913 | = 4124729 | 98 (1.150) | coding (2082/2199 nt) | priA | Primosome factor n' (replication factor Y) | |||||
| * | ? | NC_000913 | 3920240 = | 87 (0.960) | 4 (0.050) | 4/240 | NT | 5.0% | coding (164/534 nt) | atpH | F1 sector of membrane‑bound ATP synthase, delta subunit |
| ? | NC_000913 | 3920260 = | 72 (0.850) | coding (144/534 nt) | atpH | F1 sector of membrane‑bound ATP synthase, delta subunit | |||||
| * | ? | NC_000913 | 3780364 = | 98 (1.090) | 3 (0.030) | 3/254 | NT | 3.0% | coding (538/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked |
| ? | NC_000913 | 3780385 = | 96 (1.070) | coding (559/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked | |||||
| * | ? | NC_000913 | 514506 = | 83 (0.920) | 4 (0.050) | 4/248 | NT | 4.8% | coding (354/459 nt) | ybbJ | inner membrane protein; stimulator of the QmcA suppressor of ftsH‑htpX |
| ? | NC_000913 | 514539 = | 79 (0.900) | coding (321/459 nt) | ybbJ | inner membrane protein; stimulator of the QmcA suppressor of ftsH‑htpX | |||||
| * | ? | NC_000913 | 294856 = | 152 (1.680) | 4 (0.050) | 4/238 | NT | 2.7% | intergenic (‑57/+283) | yagM/yagN | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| ? | NC_000913 | 294883 = | 142 (1.690) | intergenic (‑84/+256) | yagM/yagN | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein | |||||