mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 77 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4576863 = | 130 (1.210) | 4 (0.040) | 4/240 | NT | 3.4% | intergenic (+8/+49) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| ? | NC_000913 | 4576890 = | 109 (1.100) | intergenic (+35/+22) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC | |||||
| * | ? | NC_000913 | = 4542690 | 95 (0.890) | 4 (0.040) | 4/242 | NT | 3.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 138 (1.380) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4497944 = | 130 (1.210) | 3 (0.030) | 3/242 | NT | 2.5% | intergenic (+4/‑328) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| ? | NC_000913 | 4497964 = | 116 (1.160) | intergenic (+24/‑308) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
| * | ? | NC_000913 | 4448415 = | 153 (1.430) | 5 (0.050) | 5/244 | NT | 3.6% | intergenic (+180/‑32) | ytfP/chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system |
| ? | NC_000913 | 4448434 = | 127 (1.260) | intergenic (+199/‑13) | ytfP/chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system | |||||
| * | ? | NC_000913 | = 4439180 | 116 (1.080) | 4 (0.040) | 4/246 | NT | 3.7% | coding (83/555 nt) | ytfJ | putative transcriptional regulator |
| ? | NC_000913 | = 4439235 | 98 (0.970) | coding (28/555 nt) | ytfJ | putative transcriptional regulator | |||||
| * | ? | NC_000913 | 4425590 = | 92 (0.860) | 3 (0.030) | 3/248 | NT | 3.2% | coding (71/315 nt) | priB | primosomal protein N |
| ? | NC_000913 | 4425637 = | 92 (0.900) | coding (118/315 nt) | priB | primosomal protein N | |||||
| * | ? | NC_000913 | 4251251 = | 197 (1.840) | 5 (0.050) | 5/244 | NT | 2.7% | pseudogene (291/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| ? | NC_000913 | 4251275 = | 172 (1.710) | pseudogene (315/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||
| * | ? | NC_000913 | 4067526 = | 91 (0.850) | 3 (0.030) | 3/248 | NT | 3.6% | coding (1751/2037 nt) | yihQ | putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase |
| ? | NC_000913 | 4067557 = | 76 (0.740) | coding (1720/2037 nt) | yihQ | putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase | |||||
| * | ? | NC_000913 | = 4023524 | 204 (1.900) | 5 (0.050) | 6/242 | NT | 2.5% | intergenic (+12/‑30) | tatC/tatD | TatABCE protein translocation system subunit/quality control of Tat‑exported FeS proteins; Mg‑dependent cytoplasmic DNase |
| ? | NC_000913 | = 4023528 | 204 (2.050) | intergenic (+16/‑26) | tatC/tatD | TatABCE protein translocation system subunit/quality control of Tat‑exported FeS proteins; Mg‑dependent cytoplasmic DNase | |||||
| * | ? | NC_000913 | 4011562 = | 128 (1.190) | 4 (0.040) | 4/250 | NT | 3.1% | coding (487/900 nt) | yigM | putative inner membrane EamA‑like transporter |
| ? | NC_000913 | 4011620 = | 129 (1.250) | coding (545/900 nt) | yigM | putative inner membrane EamA‑like transporter | |||||