mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4589108 | 81 (1.000) | 3 (0.040) | 4/246 | NT | 3.5% | intergenic (‑29/+21) | yjiX/yjiY | DUF466 family protein/putative transporter |
| ? | NC_000913 | = 4589112 | 88 (1.160) | intergenic (‑33/+17) | yjiX/yjiY | DUF466 family protein/putative transporter | |||||
| * | ? | NC_000913 | 4194511 = | 85 (1.050) | 3 (0.040) | 3/252 | NT | 3.9% | coding (1589/1896 nt) | thiC | phosphomethylpyrimidine synthase |
| ? | NC_000913 | 4194541 = | 65 (0.830) | coding (1559/1896 nt) | thiC | phosphomethylpyrimidine synthase | |||||
| * | ? | NC_000913 | 3999051 = | 90 (1.110) | 3 (0.040) | 3/250 | NT | 3.5% | coding (1069/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II |
| ? | NC_000913 | 3999083 = | 78 (1.010) | coding (1101/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II | |||||
| * | ? | NC_000913 | 3375666 = | 108 (1.330) | 4 (0.050) | 4/246 | NT | 4.0% | coding (798/1368 nt) | dcuD | putative transporter |
| ? | NC_000913 | 3375686 = | 92 (1.210) | coding (818/1368 nt) | dcuD | putative transporter | |||||
| * | ? | NC_000913 | 3079604 = | 112 (1.380) | 3 (0.040) | 3/240 | NT | 2.9% | intergenic (‑274/+40) | cmtB/tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| ? | NC_000913 | 3079630 = | 101 (1.360) | intergenic (‑300/+14) | cmtB/tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding | |||||
| * | ? | NC_000913 | 2849188 = | 77 (0.950) | 3 (0.040) | 3/248 | NT | 3.9% | coding (54/1827 nt) | hycC | hydrogenase 3, membrane subunit |
| ? | NC_000913 | 2849218 = | 75 (0.980) | coding (24/1827 nt) | hycC | hydrogenase 3, membrane subunit | |||||
| * | ? | NC_000913 | = 2035297 | 73 (0.900) | 4 (0.050) | 3/238 | NT | 6.0% | intergenic (+54/‑538) | yedS/hchA | pseudogene, outer membrane protein homology; putative outer membrane protein/glyoxalase III and Hsp31 molecular chaperone |
| ? | NC_000913 | = 2035305 | 59 (0.800) | intergenic (+62/‑530) | yedS/hchA | pseudogene, outer membrane protein homology; putative outer membrane protein/glyoxalase III and Hsp31 molecular chaperone | |||||
| * | ? | NC_000913 | = 1697644 | 89 (1.100) | 3 (0.040) | 3/242 | NT | 3.6% | coding (397/768 nt) | hdhA | 7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent |
| ? | NC_000913 | = 1697668 | 78 (1.040) | coding (373/768 nt) | hdhA | 7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent | |||||
| * | ? | NC_000913 | 984723 = | 83 (1.030) | 3 (0.040) | 3/246 | NT | 3.9% | coding (987/1191 nt) | aspC | aspartate aminotransferase, PLP‑dependent |
| ? | NC_000913 | 984756 = | 69 (0.910) | coding (954/1191 nt) | aspC | aspartate aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | 349884 = | 71 (0.880) | 3 (0.040) | 3/248 | NT | 4.4% | noncoding (280/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | 349916 = | 62 (0.810) | noncoding (312/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||