mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 58 (0.860) | 14 (0.240) | 14/252 | 4.3 | 19.9% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 61 (1.020) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 56 (0.830) | 5 (0.080) | 5/252 | 8.2 | 8.3% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 61 (1.020) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3515980 = | 74 (1.100) | 4 (0.060) | 4/266 | 9.3 | 5.3% | intergenic (‑69/+38) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring |
| ? | NC_000913 | 3516008 = | 73 (1.160) | intergenic (‑97/+10) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | NC_000913 | = 3384552 | 77 (1.150) | 4 (0.060) | 4/272 | 9.4 | 5.0% | intergenic (‑286/‑149) | mdh/argR | malate dehydrogenase, NAD(P)‑binding/l‑arginine‑responsive arginine metabolism regulon transcriptional regulator |
| ? | NC_000913 | = 3384560 | 77 (1.200) | intergenic (‑294/‑141) | mdh/argR | malate dehydrogenase, NAD(P)‑binding/l‑arginine‑responsive arginine metabolism regulon transcriptional regulator | |||||
| * | ? | NC_000913 | = 193453 | 67 (1.000) | 3 (0.050) | 3/264 | 9.9 | 4.8% | intergenic (+24/‑68) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
| ? | NC_000913 | = 193478 | 56 (0.900) | intergenic (+49/‑43) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase | |||||
| * | ? | NC_000913 | = 4542691 | 73 (1.090) | 3 (0.050) | 3/266 | 10.0 | 3.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542987 | 88 (1.400) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2926899 | 60 (0.890) | 3 (0.050) | 3/270 | 10.1 | 5.0% | coding (594/1365 nt) | ygdH | UPF0717 family protein |
| ? | NC_000913 | = 2926909 | 58 (0.910) | coding (604/1365 nt) | ygdH | UPF0717 family protein | |||||
| * | ? | NC_000913 | 213083 = | 62 (0.920) | 3 (0.050) | 3/276 | 10.3 | 4.8% | coding (753/1299 nt) | tilS | tRNA(Ile)‑lysidine synthetase |
| ? | NC_000913 | 213120 = | 60 (0.920) | coding (790/1299 nt) | tilS | tRNA(Ile)‑lysidine synthetase | |||||
| * | ? | NC_000913 | = 2224019 | 66 (0.980) | 3 (0.050) | 3/282 | 10.4 | 4.7% | coding (850/933 nt) | pbpG | D‑alanyl‑D‑alanine endopeptidase |
| ? | NC_000913 | 2742802 = | 56 (0.840) | coding (422/1227 nt) | yfiN | putative membrane‑anchored diguanylate cyclase | |||||
| * | ? | NC_000913 | = 2017028 | 70 (1.040) | 3 (0.050) | 3/280 | 10.4 | 4.3% | coding (475/1374 nt) | fliI | flagellum‑specific ATP synthase |
| ? | NC_000913 | = 2017106 | 63 (0.950) | coding (553/1374 nt) | fliI | flagellum‑specific ATP synthase | |||||