mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.3% | 71.6 / 37.7 | 66 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,365,453 | 0 | A | C | 22.6% | 104.5 / 25.3 | 62 | intergenic (‑97/+19) | cutA/dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| Marginal new junction evidence (lowest skew 10 of 60 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1413963 | 75 (1.350) | 7 (0.130) | 7/264 | 6.2 | 9.1% | intergenic (‑36/+21) | ralR/recT | Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein |
| ? | NC_000913 | = 1413968 | 69 (1.320) | intergenic (‑41/+16) | ralR/recT | Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein | |||||
| * | ? | NC_000913 | = 1207805 | 41 (0.740) | 6 (0.120) | 6/248 | 6.3 | 11.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 54 (1.100) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 46 (0.830) | 6 (0.120) | 5/248 | 6.9 | 11.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 54 (1.100) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 2411401 = | 71 (1.280) | 7 (0.130) | 5/266 | 7.3 | 9.7% | intergenic (‑49/+38) | yfbS/yfbT | putative transporter/sugar phosphatas |
| ? | NC_000913 | 2411421 = | 63 (1.190) | intergenic (‑69/+18) | yfbS/yfbT | putative transporter/sugar phosphatas | |||||
| * | ? | NC_000913 | = 4315807 | 41 (0.740) | 5 (0.090) | 5/270 | 7.4 | 11.2% | coding (276/558 nt) | phnN | ribose 1,5‑bisphosphokinase |
| ? | NC_000913 | = 4315817 | 40 (0.750) | coding (266/558 nt) | phnN | ribose 1,5‑bisphosphokinase | |||||
| * | ? | NC_000913 | = 2345621 | 51 (0.920) | 5 (0.090) | 5/270 | 7.4 | 8.9% | coding (757/2286 nt) | nrdA | ribonucleoside‑diphosphate reductase 1, alpha subunit |
| ? | NC_000913 | = 2345625 | 53 (0.990) | coding (761/2286 nt) | nrdA | ribonucleoside‑diphosphate reductase 1, alpha subunit | |||||
| * | ? | NC_000913 | 3852834 = | 52 (0.930) | 4 (0.080) | 4/258 | 7.7 | 8.1% | intergenic (‑50/+56) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913 | 3852867 = | 43 (0.840) | intergenic (‑83/+23) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
| * | ? | NC_000913 | 4363384 = | 44 (0.790) | 4 (0.080) | 4/264 | 7.9 | 7.4% | coding (1659/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC |
| ? | NC_000913 | 4363422 = | 58 (1.110) | coding (1621/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC | |||||
| * | ? | NC_000913 | 4296207 = | NA (NA) | 4 (0.080) | 4/266 | 7.9 | 100% | noncoding (373/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4296287 = | 0 (0.000) | noncoding (453/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4296174 = | 9 (0.160) | 4 (0.080) | 4/266 | 7.9 | 31.9% | noncoding (340/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4296207 = | NA (NA) | noncoding (373/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||