mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,126,340 | 0 | C | T | 35.7% | 42.4 / 22.1 | 44 | T157T (ACG→ACA) | priA | Primosome factor n' (replication factor Y) |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 41 (1.010) | 9 (0.250) | 9/252 | 3.0 | 19.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 39 (1.090) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 42 (1.040) | 6 (0.170) | 6/252 | 4.1 | 13.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 39 (1.090) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3717215 = | 35 (0.860) | 3 (0.080) | 3/260 | 5.8 | 8.2% | intergenic (+9/‑95) | yiaD/ghrB | multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B |
| ? | NC_000913 | 3717245 = | 35 (0.940) | intergenic (+39/‑65) | yiaD/ghrB | multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B | |||||
| * | ? | NC_000913 | = 1681570 | 45 (1.110) | 3 (0.080) | 3/270 | 6.0 | 6.4% | coding (595/723 nt) | folM | dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme |
| ? | NC_000913 | = 1681593 | 45 (1.170) | coding (618/723 nt) | folM | dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme | |||||
| * | ? | NC_000913 | = 306834 | 38 (0.940) | 3 (0.080) | 3/272 | 6.0 | 7.7% | coding (2499/2526 nt) | ecpC | ECP production outer membrane protein |
| ? | NC_000913 | = 306863 | 36 (0.930) | coding (2470/2526 nt) | ecpC | ECP production outer membrane protein | |||||
| * | ? | NC_000913 | 273987 = | NA (NA) | 3 (0.080) | 3/272 | 6.0 | NA | noncoding (1163/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274057 = | NA (NA) | noncoding (1093/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2919069 = | 49 (1.210) | 3 (0.070) | 3/282 | 6.2 | 5.8% | coding (317/1341 nt) | gudD | D‑glucarate dehydratase 1 |
| ? | NC_000913 | 3131005 = | NA (NA) | noncoding (860/1195 nt) | IS5 | repeat region | |||||