Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	93 [0]	[0] 93	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	90 (1.380)	68/268	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/1978365‑1978642                                                                                                                                          |                                                                                                                                             gttttcACTTAGCGAAGCTTGTTCGTAAATCGACGGAACTGTACTCGTCACTGCACGCACATACAAAGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                         <  2:313519‑M1/142‑6 (MQ=255) cTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                         <  2:1016287‑M1/143‑6 (MQ=255)  tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGACGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                                                                                                        >  2:507841‑M1/1‑137 (MQ=255)   ttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAGCACACAAAACACTCAATTACTTAACATAAATGtagcagt                                                                                                                                       >  2:773152‑M1/1‑136 (MQ=255)     acacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                     <  1:138245‑M1/143‑10 (MQ=255)     acacTTATCTAAGATTTTTCCTAAACCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                     <  1:451599‑M1/143‑10 (MQ=255)       acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatacgccata                                                                                                                                   >  2:535400‑M1/1‑132 (MQ=255)       acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACCTAACATAAATGtatcagtcata                                                                                                                                   >  2:539367‑M1/1‑132 (MQ=255)        gttaTCTGATATTTCTCCTAAATCGACGCAATTGTACTCGTCACTACACGCACATACTACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                  <  2:411462‑M1/142‑13 (MQ=255)            tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                              <  2:140656‑M1/143‑17 (MQ=255)              tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAGCACTCAGTTACTTGACATACATGtataagtcatacttttgt                                                                                                                            >  1:5867‑M1/1‑125 (MQ=255)              tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATACATGtataagtcatactgttgt                                                                                                                            >  2:281425‑M1/1‑125 (MQ=255)              tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                            <  1:485259‑M1/143‑19 (MQ=255)              tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                            >  1:281395‑M1/1‑125 (MQ=255)              tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                            <  1:655201‑M1/143‑19 (MQ=255)               aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                           >  1:119249‑M1/1‑124 (MQ=255)                acattTCTCCGAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                                                                                          <  2:753530‑M1/141‑21 (MQ=255)                    ttttCCTAAATGGGGGCACCTGTACTCGTCACGACACGCACATAGAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                      <  2:8973‑M1/143‑25 (MQ=255)                     tttCCTAACCCGACGCACCTGTACACGCCACCACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAACGtataagtcatacttttgttttgggt                                                                                                                     <  1:54622‑M1/143‑26 (MQ=255)                         cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat                                                                                                                 >  1:178339‑M1/1‑114 (MQ=255)                         cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacgtttgttttgggtgtat                                                                                                                 >  1:291536‑M1/1‑114 (MQ=255)                          taaggcgacgcCTCTGTACTCGTCGCTACACGCACAGACAACGGATGGGTGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATGACTTAACATATATGtataagtcatacttttgttttgggtgtatt                                                                                                                <  2:1020330‑M1/138‑31 (MQ=255)                          tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttctgttttgggtgtatt                                                                                                                >  2:562802‑M1/1‑113 (MQ=255)                           aaaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTTAATTACTAAACATAAATGtataattcatactcttgttttgggtgtattt                                                                                                               >  2:138517‑M1/1‑112 (MQ=255)                           aaaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                               >  1:196423‑M1/1‑112 (MQ=255)                             aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttca                                                                                                             >  2:662502‑M1/1‑110 (MQ=255)                              tCGACGGGACTGTACGCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                            <  2:425720‑M1/143‑35 (MQ=255)                               cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                           >  1:385422‑M1/1‑108 (MQ=255)                               cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                           <  1:1141660‑M1/143‑36 (MQ=255)                                     aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                                                                     >  1:753675‑M1/1‑102 (MQ=255)                                       cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaa                                                                                                   >  1:960663‑M1/1‑100 (MQ=255)                                         gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCCCACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaacaa                                                                                                 >  1:1231054‑M1/1‑98 (MQ=255)                                          tACACGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                                                                >  1:245505‑M1/1‑97 (MQ=255)                                             tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                             >  1:423176‑M1/1‑94 (MQ=255)                                             tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                             >  1:836779‑M1/1‑94 (MQ=255)                                             tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                             >  1:991852‑M1/1‑94 (MQ=255)                                                 caccacACGCACATACAACCGAGGGAGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                         <  2:1062956‑M1/143‑54 (MQ=255)                                                   cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct                                                                                       <  1:180263‑M1/143‑56 (MQ=255)                                                    tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataattcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta                                                                                      <  2:556465‑M1/143‑57 (MQ=255)                                                      cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctccg                                                                                    >  1:34281‑M1/1‑85 (MQ=255)                                                      cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                    <  1:1183234‑M1/143‑59 (MQ=255)                                                       acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                   >  2:462037‑M1/1‑84 (MQ=255)                                                         gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                 >  1:721341‑M1/1‑82 (MQ=255)                                                         gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtagcagttttaaggtgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                 >  1:525439‑M1/1‑82 (MQ=255)                                                          cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttacaaccatttaatattttttcgctacgctag                                                                                <  2:1096553‑M1/143‑63 (MQ=255)                                                              tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtctaagaatgactgttctgttgggtgtatttcaatctgttaaaaagtttttctctacgctagcaag                                                                            >  2:437197‑M1/1‑77 (MQ=255)                                                                 aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatcttttaaaaagtttttcgctacgctagcaagcaa                                                                         >  2:978556‑M1/1‑74 (MQ=255)                                                                 aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttggttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                                                         >  2:453550‑M1/1‑74 (MQ=255)                                                                  aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaa                                                                        >  1:646965‑M1/1‑73 (MQ=255)                                                                  aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaa                                                                        >  1:167384‑M1/1‑73 (MQ=255)                                                                    ggAGGGGGGCTGCGAGTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattccaatctgttaaaaagtttttccctacactagcaagaaaaaa                                                                      >  1:88770‑M1/1‑71 (MQ=255)                                                                       ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAAGTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                   <  1:19197‑M1/143‑76 (MQ=255)                                                                         ggggCAGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                 <  2:437203‑M1/143‑78 (MQ=255)                                                                         gcggctGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                 <  2:933788‑M1/141‑78 (MQ=255)                                                                           ggcggcGAGTTTCAATAGTGCGTGATGCAGATCACACAAAACATTTAATTACTTAATATAAATGtacaagtcatacttttgttttgggtgtacttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaacca                                                               <  2:1195988‑M1/143‑80 (MQ=255)                                                                           ggCTGCGATTGTCAGTAAGGCGTGATGGAGATCACAGAAAACACTCGATTACGTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaaggaaaaaggaaaca                                                               <  2:450095‑M1/143‑80 (MQ=255)                                                                           cgcTGCGCTTTTCACTAATGCGTGATGCAGATCACACAAAACACTCAATTACTGAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttccctacgctagtaagcaaaaatgaaaca                                                               <  2:448770‑M1/142‑80 (MQ=255)                                                                             cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtcgaaggcatgcttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagtaagcaaaaatgaaacagg                                                             >  2:313557‑M1/1‑62 (MQ=255)                                                                               gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaa                                                           <  1:740354‑M1/143‑84 (MQ=255)                                                                                     tccaaTAAAACGAGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttaggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg                                                     <  1:164298‑M1/141‑90 (MQ=255)                                                                                      tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcga                                                    <  2:294743‑M1/143‑91 (MQ=255)                                                                                       cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggctgtatttcaatgcgttgataaggttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa                                                   >  2:886111‑M1/1‑52 (MQ=255)                                                                                          taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                                <  1:612094‑M1/143‑95 (MQ=255)                                                                                          taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                                <  1:417681‑M1/143‑95 (MQ=255)                                                                                           aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg                                               <  1:27593‑M1/143‑96 (MQ=255)                                                                                                 tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                         <  2:232412‑M1/143‑102 (MQ=255)                                                                                                 tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcacacttttgcattttgttgatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                         >  1:342007‑M1/1‑42 (MQ=255)                                                                                                    tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcg                                      >  1:749754‑M1/1‑39 (MQ=255)                                                                                                      cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaactgaaacaggaataatccaaacgggtggttgcgcc                                    >  2:19066‑M1/1‑37 (MQ=255)                                                                                                          tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaccgt                                >  2:20392‑M1/1‑33 (MQ=255)                                                                                                            acacaAAACTCTCGGTTACGTAACATAAATGtataagtcatacttttgttgtgggtgtatttcaatctgttaaaaaggttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                              <  2:1030841‑M1/143‑113 (MQ=255)                                                                                                            acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                              >  2:331615‑M1/1‑31 (MQ=255)                                                                                                              acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaacaatgaaaataattgatgtgaaatgggatgttgcgcacagtcaaa                            >  1:1178770‑M1/1‑29 (MQ=255)                                                                                                               taaaacACTTGATTACTTAACATCAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcgacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                           <  2:1085598‑M1/142‑116 (MQ=255)                                                                                                               caAAACACTCAATTACATAACATAAATGtataagtcatacttttggttagagtgtacttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaaagtcaaaa                           <  1:1204730‑M1/143‑116 (MQ=255)                                                                                                                  aactcccaattacTTATCACAATAGtataagtcatacgtttgttttgagtgtatttcaatctgttaaacaggttgtcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                        <  2:1051573‑M1/137‑119 (MQ=255)                                                                                                                  aaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                        <  2:25617‑M1/143‑119 (MQ=255)                                                                                                                  aaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaagtaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                        >  1:1078325‑M1/1‑25 (MQ=255)                                                                                                                    cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                      <  2:960663‑M1/143‑121 (MQ=255)                                                                                                                       tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcacgcaaaaaatgaaacagaaataatcgaaatgggatgttgcgcagagaaaaaaaaaatca                   >  2:1105236‑M1/1‑20 (MQ=255)                                                                                                                       tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaacataactcac                   >  1:665238‑M1/1‑20 (MQ=255)                                                                                                                       tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                   >  1:854599‑M1/1‑20 (MQ=255)                                                                                                                         aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                 >  1:1073285‑M1/1‑18 (MQ=255)                                                                                                                         aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttagctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                 >  1:175270‑M1/1‑18 (MQ=255)                                                                                                                          aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgatagcaagcaaaaatgaaacatagataatcgaaatgggatgttgcgcacagtaaaaaaaaccaaacgt                >  2:553439‑M1/1‑17 (MQ=255)                                                                                                                           ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgta               >  1:938543‑M1/1‑16 (MQ=255)                                                                                                                               ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata           >  1:1132245‑M1/1‑12 (MQ=255)                                                                                                                                tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatttggcgcacagtcaaaataactcaccgtaaataa          <  2:385422‑M1/143‑133 (MQ=255)                                                                                                                                 aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaccgtcaaaataactcaccgtaaataat         >  1:554541‑M1/1‑10 (MQ=255)                                                                                                                                  aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc        <  1:70679‑M1/143‑135 (MQ=255)                                                                                                                                    aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagaacgcattaatgaaacaggaataatcgacatgggatgttgcgcacagtcaaaataacacaccgtaaaaaataat      >  2:442465‑M1/1‑7 (MQ=255)                                                                                                                                      aaaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaaaggaataatcgaaatgggatgttgcgcacagtcaaaataacacaccgtaaataatcatcg    >  2:922173‑M1/1‑5 (MQ=255)                                                                                                                                        aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgc  >  1:159934‑M1/1‑3 (MQ=255)                                                                                                                                          |                                                                                                                                             CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/1978365‑1978642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑