Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	93 [0]	[0] 93	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	90 (1.380)	68/268	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGC  >  NC_000913/1979141‑1979418                                                                                                                                           |                                                                                                                                              gttttcacttagcgaagcttgttcgtaaatcgacggaactgtactcgtcactgcacgcacatacaaaggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                           <  2:313519‑M2/5‑1 (MQ=255) ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                           <  2:1016287‑M2/5‑1 (MQ=255)  tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggacgggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                                                                                                          >  2:507841‑M2/138‑143 (MQ=255)   ttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagagcacacaaaacactcaattacttaacataaatgtagcagt                                                                                                                                         >  2:773152‑M2/137‑138 (MQ=255)     acacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                       <  1:138245‑M2/9‑1 (MQ=255)     acacttatctaagatttttcctaaaccgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                       <  1:451599‑M2/9‑1 (MQ=255)       acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATACGCCATa                                                                                                                                     >  2:535400‑M2/133‑143 (MQ=255)       acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacctaacataaatgTATCAGTCATa                                                                                                                                     >  2:539367‑M2/133‑143 (MQ=255)        gttatctgatatttctcctaaatcgacgcaattgtactcgtcactacacgcacatactacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                    <  2:411462‑M2/12‑1 (MQ=255)            tctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                                <  2:140656‑M2/16‑1 (MQ=255)              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaagcactcagttacttgacatacatgTATAAGTCATACttttgt                                                                                                                              >  1:5867‑M2/126‑143 (MQ=255)              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatacatgTATAAGTCATACtgttgt                                                                                                                              >  2:281425‑M2/126‑143 (MQ=255)              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                                                                                                              <  1:485259‑M2/18‑1 (MQ=255)              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                                                                                                              >  1:281395‑M2/126‑143 (MQ=255)              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                                                                                                              <  1:655201‑M2/18‑1 (MQ=255)               aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                             >  1:119249‑M2/125‑143 (MQ=255)                acatttctccgaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt                                                                                                                            <  2:753530‑M2/20‑1 (MQ=255)                    ttttcctaaatgggggcacctgtactcgtcacgacacgcacatagaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                                                                        <  2:8973‑M2/24‑1 (MQ=255)                     tttcctaacccgacgcacctgtacacgccaccacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaacgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                       <  1:54622‑M2/25‑1 (MQ=255)                         ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt                                                                                                                   >  1:178339‑M2/115‑143 (MQ=255)                         ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACGTTTGTTTTGGGTGTAt                                                                                                                   >  1:291536‑M2/115‑143 (MQ=255)                          taaggcgacgcctctgtactcgtcgctacacgcacagacaacggatgggtgctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaatgacttaacatatatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                                                                  <  2:1020330‑M2/30‑1 (MQ=255)                          taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTCTGTTTTGGGTGTAtt                                                                                                                  >  2:562802‑M2/114‑143 (MQ=255)                           aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacttaattactaaacataaatgTATAATTCATACTCTTGTTTTGGGTGTAttt                                                                                                                 >  2:138517‑M2/113‑143 (MQ=255)                           aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                                 >  1:196423‑M2/113‑143 (MQ=255)                             atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                                                               >  2:662502‑M2/111‑143 (MQ=255)                              tcgacgggactgtacgcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                                                              <  2:425720‑M2/34‑1 (MQ=255)                               cgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                             >  1:385422‑M2/109‑143 (MQ=255)                               cgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                             <  1:1141660‑M2/35‑1 (MQ=255)                                     aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                                                                       >  1:753675‑M2/103‑143 (MQ=255)                                       ctgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                                                                                     >  1:960663‑M2/101‑143 (MQ=255)                                         gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcccacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaacaa                                                                                                   >  1:1231054‑M2/99‑143 (MQ=255)                                          tacacgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                                                                  >  1:245505‑M2/98‑143 (MQ=255)                                             tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                               >  1:423176‑M2/95‑143 (MQ=255)                                             tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                               >  1:836779‑M2/95‑143 (MQ=255)                                             tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                               >  1:991852‑M2/95‑143 (MQ=255)                                                 caccacacgcacatacaaccgagggaggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                                                           <  2:1062956‑M2/53‑1 (MQ=255)                                                   ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                         <  1:180263‑M2/55‑1 (MQ=255)                                                    tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAATTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                                                                        <  2:556465‑M2/56‑1 (MQ=255)                                                      cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctccg                                                                                      >  1:34281‑M2/86‑143 (MQ=255)                                                      cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg                                                                                      <  1:1183234‑M2/58‑1 (MQ=255)                                                       acgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                                                                     >  2:462037‑M2/85‑143 (MQ=255)                                                         gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                   >  1:721341‑M2/83‑143 (MQ=255)                                                         gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTAGCAGTTTTAAGGTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                   >  1:525439‑M2/83‑143 (MQ=255)                                                          cacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTACAACCATTTAATATTTTTTCGCTACGCTag                                                                                  <  2:1096553‑M2/62‑1 (MQ=255)                                                              tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTCTAAGAATGACTGTTCTGTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCTCTACGCTagcaag                                                                              >  2:437197‑M2/78‑143 (MQ=255)                                                                 aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTTTTAAAAAGTTTTTCGCTACGCTAgcaagc‑aa                                                                          >  2:978556‑M2/75‑143 (MQ=255)                                                                 aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTGGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagc‑aa                                                                          >  2:453550‑M2/75‑143 (MQ=255)                                                                  acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑aaa                                                                         >  1:646965‑M2/74‑143 (MQ=255)                                                                  acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑aaa                                                                         >  1:167384‑M2/74‑143 (MQ=255)                                                                    ggaggggggctgcgagtttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTCCAATCTGTTAAAAAGTTTTTCCCTACACTAGCAAGa‑aaaaa                                                                       >  1:88770‑M2/72‑143 (MQ=255)                                                                       ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaagtacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGa                                                                    <  1:19197‑M2/75‑1 (MQ=255)                                                                         ggggcagcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGaaa                                                                  <  2:437203‑M2/77‑1 (MQ=255)                                                                         gcggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGaaa                                                                  <  2:933788‑M2/77‑1 (MQ=255)                                                                           ggctgcgattgtcagtaaggcgtgatggagatcacagaaaacactcgattacgtaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGG‑AAAAAGGAAACa                                                                <  2:450095‑M2/79‑1 (MQ=255)                                                                           ggcggcgagtttcaatagtgcgtgatgcagatcacacaaaacatttaattacttaatataaatgTACAAGTCATACTTTTGTTTTGGGTGTACTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAACCa                                                                <  2:1195988‑M2/79‑1 (MQ=255)                                                                           cgctgcgcttttcactaatgcgtgatgcagatcacacaaaacactcaattactgaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCCCTACGCTAGTAAGC‑AAAAATGAAACa                                                                <  2:448770‑M2/79‑1 (MQ=255)                                                                             ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTCGAAGGCATGCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGTAAGC‑AAAAATGAAACAgg                                                              >  2:313557‑M2/63‑143 (MQ=255)                                                                               gcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGaa                                                            <  1:740354‑M2/83‑1 (MQ=255)                                                                                     tccaataaaacgagatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTAGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑Cg                                                     <  1:164298‑M2/89‑1 (MQ=255)                                                                                      tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGa                                                    <  2:294743‑M2/90‑1 (MQ=255)                                                                                       caataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGCTGTATTTCAATGCGTTGATAAGGTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGaa                                                   >  2:886111‑M2/53‑143 (MQ=255)                                                                                          taatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATg                                                <  1:612094‑M2/94‑1 (MQ=255)                                                                                          taatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATg                                                <  1:417681‑M2/94‑1 (MQ=255)                                                                                           aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATgg                                               <  1:27593‑M2/95‑1 (MQ=255)                                                                                                 tgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGtt                                         <  2:232412‑M2/101‑1 (MQ=255)                                                                                                 tgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCACACTTTTGCATTTTGTTGATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGtt                                         >  1:342007‑M2/43‑143 (MQ=255)                                                                                                    tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTgcg                                      >  1:749754‑M2/40‑143 (MQ=255)                                                                                                      cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAACTGAAACAGGAATAAT‑CCAAACGGGTGGTtgcgcc                                    >  2:19066‑M2/38‑142 (MQ=255)                                                                                                          tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACCGt                                >  2:20392‑M2/34‑143 (MQ=255)                                                                                                            acacaaaactctcggttacgtaacataaatgTATAAGTCATACTTTTGTTGTGGGTGTATTTCAATCTGTTAAAAAGGTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCa                              <  2:1030841‑M2/112‑1 (MQ=255)                                                                                                            acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCa                              >  2:331615‑M2/32‑143 (MQ=255)                                                                                                              acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AACAATGAAA‑ATAATTGATGTGAAATGGGATGTTGCGCACAGTCaaa                            >  1:1178770‑M2/30‑143 (MQ=255)                                                                                                               taaaacacttgattacttaacatcaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCGACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCaaaa                           <  2:1085598‑M2/115‑1 (MQ=255)                                                                                                               caaaacactcaattacataacataaatgTATAAGTCATACTTTTGGTTAGAGTGTACTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCAAAGTCaaaa                           <  1:1204730‑M2/115‑1 (MQ=255)                                                                                                                  aactcccaattacttatcacaatagTATAAGTCATACGTTTGTTTTGAGTGTATTTCAATCTGTTAAACAGGTTGTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATaa                        <  2:1051573‑M2/118‑1 (MQ=255)                                                                                                                  aacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATaa                        <  2:25617‑M2/118‑1 (MQ=255)                                                                                                                  aacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAAGTAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATaa                        >  1:1078325‑M2/26‑143 (MQ=255)                                                                                                                    cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATAACt                      <  2:960663‑M2/120‑1 (MQ=255)                                                                                                                       tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCACGCAAAAAATGAAACAGAAATAAT‑CGAAATGGGATGTTGCGCAGAGAAAAAAAAAATCa                    >  2:1105236‑M2/21‑143 (MQ=255)                                                                                                                       tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAACATAACTCAc                   >  1:665238‑M2/21‑143 (MQ=255)                                                                                                                       tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                   >  1:854599‑M2/21‑143 (MQ=255)                                                                                                                         aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg                 >  1:1073285‑M2/19‑143 (MQ=255)                                                                                                                         aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTAGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg                 >  1:175270‑M2/19‑143 (MQ=255)                                                                                                                          attacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGATAGCAAGC‑AAAAATGAAACATAGATAAT‑CGAAATGGGATGTTGCGCACAGTAaaaaaaaccaaacgt                >  2:553439‑M2/18‑136 (MQ=255)                                                                                                                           ttacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTa               >  1:938543‑M2/17‑143 (MQ=255)                                                                                                                               ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata           >  1:1132245‑M2/13‑143 (MQ=255)                                                                                                                                taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATTTGGCGCACAGTCAAAATAACTCACCGTAaataa          <  2:385422‑M2/132‑1 (MQ=255)                                                                                                                                 aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACCGTCAAAATAACTCACCGTAaataat         >  1:554541‑M2/11‑143 (MQ=255)                                                                                                                                  acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc        <  1:70679‑M2/134‑1 (MQ=255)                                                                                                                                    ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGAACGC‑ATTAATGAAACAGGAATAAT‑CGACATGGGATGTTGCGCACAGTCAAAATAACACACCGTAAAAaataat      >  2:442465‑M2/8‑143 (MQ=255)                                                                                                                                      aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAAAAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATAACACACCGTAAATaatcatcg    >  2:922173‑M2/6‑142 (MQ=255)                                                                                                                                        atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc  >  1:159934‑M2/4‑143 (MQ=255)                                                                                                                                           |                                                                                                                                              GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGC‑AAAAATGAAACAGGAATAAT‑CGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGC  >  NC_000913/1979141‑1979418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑