mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.5% | 49.0 / 48.3 | 65 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3946053 | 2 (0.040) | 5 (0.110) | 5/276 | 6.0 | 72.0% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 5 (0.110) | 5/276 | 6.0 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 781369 = | 41 (0.870) | 7 (0.150) +GAG |
4/278 | 6.6 | 16.0% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 34 (0.720) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | = 4185519 | 48 (1.010) | 3 (0.070) | 3/274 | 7.1 | 6.3% | coding (170/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| ? | NC_000913 | = 4185543 | 43 (0.940) | coding (194/4224 nt) | rpoC | RNA polymerase, beta prime subunit | |||||
| * | ? | NC_000913 | = 3915903 | 41 (0.870) | 3 (0.060) | 3/280 | 7.2 | 6.4% | coding (70/420 nt) | atpC | F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| ? | NC_000913 | = 3915925 | 47 (1.010) | coding (48/420 nt) | atpC | F1 sector of membrane‑bound ATP synthase, epsilon subunit | |||||
| * | ? | NC_000913 | = 64236 | 41 (0.870) | 3 (0.060) | 3/278 | 7.2 | 6.4% | coding (1545/2352 nt) | polB | DNA polymerase II |
| ? | NC_000913 | = 64259 | 47 (1.020) | coding (1522/2352 nt) | polB | DNA polymerase II | |||||
| * | ? | NC_000913 | 781369 = | 41 (0.870) | 6 (0.130) +G |
3/282 | 7.3 | 13.6% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521128 | 36 (0.760) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||