mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 24.7% | 95.0 / 33.1 | 74 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 50 (0.780) | 14 (0.250) | 13/252 | 4.5 | 26.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 35 (0.620) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3423376 = | 83 (1.290) | 6 (0.090) | 6/280 | 8.2 | 6.8% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423665 = | NA (NA) | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | = 972568 | 73 (1.140) | 5 (0.080) | 5/264 | 8.3 | 6.6% | coding (817/894 nt) | ycbJ | protein kinase‑like domain protein |
| ? | NC_000913 | = 972596 | 74 (1.240) | coding (845/894 nt) | ycbJ | protein kinase‑like domain protein | |||||
| * | ? | NC_000913 | 3423376 = | 83 (1.290) | 6 (0.090) | 5/280 | 8.7 | 11.8% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3946822 | 8 (0.130) | intergenic (+3/‑50) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp | |||||
| * | ? | NC_000913 | = 4542690 | 48 (0.750) | 4 (0.070) | 4/266 | 9.0 | 6.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 65 (1.080) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 44 (0.690) | 4 (0.070) | 4/266 | 9.0 | 6.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 66 (1.100) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3423376 = | 83 (1.290) | 9 (0.140) | 4/280 | 9.4 | 10.8% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213162 | 66 (1.040) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | 1470336 = | NA (NA) | 52 (0.810) | 4/284 | 9.5 | NA | noncoding (1041/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 1691381 | 55 (0.860) | 3 (0.050) | 3/260 | 9.6 | 5.8% | intergenic (+21/+205) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein |
| ? | NC_000913 | = 1691389 | 47 (0.800) | intergenic (+29/+197) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein | |||||
| * | ? | NC_000913 | = 4235578 | 65 (1.010) | 3 (0.050) | 3/266 | 9.7 | 4.7% | intergenic (+171/‑328) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913 | = 4235583 | 61 (1.020) | intergenic (+176/‑323) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||