Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,536,312 Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp coding (479‑484/510 nt) crr → glucose‑specific enzyme IIA component of PTS

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2514274 =NA (NA)47 (0.790) 41/278 0.4 100% noncoding (2/1345 nt) IS186 repeat region
?NC_000913 = 2536317 0 (0.000)coding (484/510 nt) crr glucose‑specific enzyme IIA component of PTS
* ? NC_000913 = 2515616NA (NA)64 (1.060) 47/280 0.2 100% noncoding (1344/1345 nt) IS186 repeat region
?NC_000913 2536312 = 0 (0.000)coding (479/510 nt) crr glucose‑specific enzyme IIA component of PTS

AATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/2514140‑2514414
                                                                                                                                      |                                                                                                                                            
gatgaaGAGCGTGGTAACGTGGTTGCTCGTTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgc                                                                                                                                      <  2:879119/142‑1 (MQ=255)
 aggaaGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgcg                                                                                                                                     <  2:1094873/141‑1 (MQ=255)
    aaGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATCATTCCCACCAGCGCTa                                                                                                                                  >  2:1053816/1‑143 (MQ=255)
     agagCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTGTGCGGCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGGTAATTCCCATAAGCGCTaa                                                                                                                                 >  1:59665/1‑143 (MQ=255)
     agagCAAGGTAACGTGGTTGCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTaa                                                                                                                                 <  1:275082/143‑1 (MQ=255)
            ggTCACGTGGTTGCTCGCTGCGGTCGGAGGCTGGTTTACGGCTCTACCCGGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAgg                                                                                                                          <  2:214296/143‑1 (MQ=255)
                  gTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAATACCATACATAAAACAGCCGGGGATAATTCCCCTCCGCCCTAACTTTTCGGTtgtg                                                                                                                    >  1:1069898/1‑143 (MQ=255)
                  gTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAACAAAGCCGGGGATAATTCCCATAAGCGCTCACTTAAGGGTtgtg                                                                                                                    >  1:783728/1‑143 (MQ=255)
                  gTGGTTTCTCGCTTCGGTATGACATTGTTGTACCGCGCTCCGCTGGTGAGTCTGCTGTCTGGGTCAATCGCAGCACTGGTGCTGTAATACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgtg                                                                                                                    <  2:527432/143‑1 (MQ=255)
                       ttCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGAGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt                                                                                                               >  1:1060130/1‑143 (MQ=255)
                               tCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa                                                                                                       <  1:647466/143‑1 (MQ=255)
                                cGGTCTGAAGCTGGTTTACGGCTCTGCCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat                                                                                                      <  2:1064745/143‑1 (MQ=255)
                                 ggTGTGAAGCTGGTGTACGGCTCTACCCTGGTGAGGGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAGAAGCCGGGGAGAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata                                                                                                     <  2:64051/143‑1 (MQ=38)
                                   tCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg                                                                                                   >  1:1078032/1‑143 (MQ=255)
                                    cTGGAGCTGGTTTTCGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATCAAAAAGCCGGGGATAATTCCCATATGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa                                                                                                  <  1:676748/143‑1 (MQ=255)
                                    cTGAAGCTGGTTTACGGCTCTACCCTGGTGCGCCTAATTTCGCTGTCATTCGCAGCACTGTTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa                                                                                                  <  2:487083/143‑1 (MQ=25)
                                      gAAGCTGGATTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATCCCCAGAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGAtt                                                                                                <  2:337968/143‑1 (MQ=255)
                                               ttACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTCAGACCACACATAAAAAAGCCGGGGATACTTCAAATAAGCGCTAACTTAAAGGTTGTGATATAAAGACTGATACGATATACCGTGcc                                                                                       >  2:588469/1‑143 (MQ=255)
                                                        tACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAGATAACGTGCGGATGAATTa                                                                              >  2:564635/1‑143 (MQ=255)
                                                          ccgtGGTGAGTGTGCTGTCTGCGTCAGTCGCAGAGCTGGCGCGAGATTACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct                                                                            <  1:625108/140‑1 (MQ=18)
                                                             tGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc                                                                         <  1:232328/143‑1 (MQ=255)
                                                              ggTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa                                                                        <  1:644547/143‑1 (MQ=255)
                                                              ggTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCAGACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTCAAGGGTTGTGGTATTACGCCCGATATGATCTAACGTGCTGATGAATTCCCCTCa                                                                        >  2:849188/1‑143 (MQ=25)
                                                               gTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATTCATTACTCTAAc                                                                       >  1:1052287/1‑143 (MQ=255)
                                                                    tgtgCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCAGACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATaa                                                                  <  1:1029956/143‑1 (MQ=255)
                                                                         tGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGCTTTAACGTGCCGATGAATTACTCTCACGATAACTGGt                                                             >  2:994558/1‑143 (MQ=255)
                                                                         tGTCTCCGTCCATCGCTGCACTGTTGCTGTAAGACCATACATAAAAAAGCCTGGTATCATCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTTCTCTCACGATAACTGGt                                                             <  2:855419/143‑1 (MQ=18)
                                                                               cGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCaa                                                       >  2:314823/1‑143 (MQ=255)
                                                                                gTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTACGGGTTGTGGTATTACGCCTGATATGATTTTACTTGCCGATGAATTGCTCTCGCGCTCACTGTTCAGCatt                                                      >  1:692388/1‑141 (MQ=21)
                                                                                 tCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAAtt                                                     <  2:1060130/143‑1 (MQ=255)
                                                                                  caagcccagcaCTGGTGCTGTAAGACCATGCATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGTATTACTCTCACGATAACTGGTCAGCAATTc                                                    <  1:364842/137‑1 (MQ=255)
                                                                                  cAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAg                                                          <  2:99524/137‑1 (MQ=255)
                                                                                  cAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAg                                                          >  1:99524/1‑137 (MQ=255)
                                                                                  cAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTc                                                    <  1:290911/143‑1 (MQ=255)
                                                                                    aTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCGATTCTg                                                  >  1:584312/1‑143 (MQ=255)
                                                                                    aTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTCGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATCCCTGGTCAGCAGTTCTg                                                  >  1:298717/1‑143 (MQ=255)
                                                                                     tCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                 >  2:583675/1‑143 (MQ=255)
                                                                                     ccGCAGCACTGGTGATGTAAGCCCAGACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGTTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                 <  1:132672/142‑1 (MQ=255)
                                                                                      cGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                                                <  1:87952/143‑1 (MQ=255)
                                                                                         aggattGGTGTTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCa                                             <  2:32753/138‑1 (MQ=255)
                                                                                              gggTGCTGCAAGCCCATACCTAAAAAAGCCGGGGATAATTCCCCTAAGCGCGACCGTAAGGGATGTGTTAGTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                        <  1:566450/142‑1 (MQ=17)
                                                                                                gtggcgTAAGACCATACATAAAAAAGCCGCGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTTATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGt                                      <  2:928638/138‑1 (MQ=255)
                                                                                                gTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGt                                      >  1:455131/1‑143 (MQ=255)
                                                                                                  gCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTCGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCCTATCGGtcc                                    >  2:989472/1‑141 (MQ=255)
                                                                                                   cTGTAAGACCATACGTAGAAGAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAg                                   <  2:361944/143‑1 (MQ=255)
                                                                                                      tAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGccc                                >  1:790023/1‑143 (MQ=255)
                                                                                                         gACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGAAATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATCCTGGCCCATCTTGGCAAGccctga                             >  2:1988/1‑140 (MQ=17)
                                                                                                         gACCATAAATAAACAAGCCGGGTATGCTTCCCATAAGCGCTAACTTAGCTGTGGTGGTATTACGCCTGATATGATTTAACGTTCCCATGAATTACTCTCACGATACCTTGTCAGCAATTCTTGCCCATATTGGTAAGCCCtaa                             <  2:912517/143‑1 (MQ=14)
                                                                                                                cataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAAGATAACTCGACAGCAACTCTGGCCCACATTGGAAAGCCCGAAGAACTgg                      >  2:583532/1‑143 (MQ=14)
                                                                                                                 ataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGCACTGGa                     >  1:742484/1‑143 (MQ=255)
                                                                                                                   aaaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAATATAACTGGTACGCAATTCTGGCCCATCTTTGTAAGCCCGCAGAACGGGATa                   >  2:602292/1‑143 (MQ=14)
                                                                                                                             gggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACg         >  1:475708/1‑143 (MQ=35)
                                                                                                                              ggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCCCGt        >  2:934976/1‑143 (MQ=25)
                                                                                                                               gATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCCAAGAACTGGATACTTCGGACCGTa       >  2:202193/1‑143 (MQ=255)
                                                                                                                                aTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTaa      >  1:788067/1‑143 (MQ=33)
                                                                                                                                    ttCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCGTGTATTGGTAAACCCGAAGAACTGGATACTTCGGCACGTAATGcc  >  2:486462/1‑143 (MQ=2)
                                                                                                                                      |                                                                                                                                            
AATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/2514140‑2514414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.