mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4262714 = | 185 (1.070) | 4 (0.020) | 3/486 | NT | 2.1% | intergenic (+9/‑125) | dusA/pspG | tRNA‑dihydrouridine synthase A/phage shock protein G |
| ? | NC_000913 | 4262858 = | 201 (1.210) | coding (20/243 nt) | pspG | phage shock protein G | |||||
| * | ? | NC_000913 | = 4034101 | 219 (1.270) | 3 (0.020) | 3/490 | NT | 1.4% | coding (958/1452 nt) | trkH | potassium transporter |
| ? | NC_000913 | = 4034171 | 207 (1.240) | coding (1028/1452 nt) | trkH | potassium transporter | |||||
| * | ? | NC_000913 | 4031765 = | 158 (0.910) | 3 (0.020) | 3/498 | NT | 1.7% | coding (606/1332 nt) | pepQ | proline dipeptidase |
| ? | NC_000913 | 4032530 = | 202 (1.190) | coding (40/615 nt) | yigZ | UPF0029 family protein | |||||
| * | ? | NC_000913 | 3817370 = | 205 (1.180) | 4 (0.020) | 4/490 | NT | 1.9% | coding (696/864 nt) | yicC | UPF0701 family protein |
| ? | NC_000913 | 3817609 = | 209 (1.250) | intergenic (+71/‑150) | yicC/dinD | UPF0701 family protein/DNA damage‑inducible protein | |||||
| * | ? | NC_000913 | = 3786579 | 216 (1.250) | 3 (0.020) | 3/498 | NT | 1.4% | coding (1321/1545 nt) | gpmM | phosphoglycero mutase III, cofactor‑independent |
| ? | NC_000913 | 3786590 = | 210 (1.240) | coding (1332/1545 nt) | gpmM | phosphoglycero mutase III, cofactor‑independent | |||||
| * | ? | NC_000913 | = 3614762 | 191 (1.100) | 3 (0.020) | 3/484 | NT | 1.7% | coding (1097/1575 nt) | nikA | nickel/heme ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 3614955 | 172 (1.040) | coding (1290/1575 nt) | nikA | nickel/heme ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 2290110 | NA (NA) | 3 (0.020) | 3/506 | NT | 1.6% | intergenic (‑31/+2) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system |
| ? | NC_000913 | = 3526451 | 187 (1.080) | intergenic (‑304/‑16) | nudE/yrfF | adenosine nucleotide hydrolase, Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein | |||||
| * | ? | NC_000913 | 2077808 = | 169 (0.980) | 4 (0.020) | 4/484 | NT | 2.4% | coding (240/375 nt) | cbtA | CP4‑44 prophage, toxin of the YeeV‑YeeU toxin‑antitoxin system |
| ? | NC_000913 | 2077982 = | 158 (0.960) | pseudogene (43/168 nt) | yeeW | CP4‑44 prophage, uncharacterized protein,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 2012857 = | 153 (0.880) | 3 (0.020) | 3/488 | NT | 2.0% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | NC_000913 | 2012911 = | 145 (0.870) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
| * | ? | NC_000913 | 1159285 = | 168 (0.970) | 4 (0.020) | 4/504 | NT | 2.3% | coding (1417/1434 nt) | ptsG | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| ? | NC_000913 | = 1469238 | NA (NA) | intergenic (‑89/‑3) | insC1/ydbA | IS2 repressor TnpA/pseudogene, autotransporter homolog, interrupted by IS2 and IS30 | |||||